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OR359401.1__WNO28901.1__vBKpnMJEC_0014__00014
Bact-VirOR359401.1__WNO28901.1__vBKpnMJEC_0014__00014
Identity
- Accession:
- OR359401 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Jiaodavirus›
Klebsiella_phage_vB_KpnM-JEC
TaxID: 3075854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-96
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25676.2 best | T4_Spackle | 88.5 | 5.10e-25 | 100.0% | 71.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.71 | 58.0 | 5.81e-01 | 97.2% | 87.8% |
| 4gr2A00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.67 | 46.0 | 3.94e-01 | 70.4% | 67.3% |
| 1nmrA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.67 | 50.0 | 4.95e-01 | 87.3% | 75.0% |
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.66 | 45.0 | 3.64e-01 | 70.4% | 75.0% |
| 3rylA01 | 1.20.120.1210 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 49.0 | 3.95e-01 | 81.7% | 80.3% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.61 | 49.0 | 5.00e-01 | 84.5% | 100.0% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 45.0 | 4.65e-01 | 77.5% | 96.9% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 48.0 | 3.71e-01 | 85.9% | 72.0% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.60 | 47.0 | 4.07e-01 | 85.9% | 82.1% |
| 2mgwA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 38.0 | 4.21e-01 | 88.7% | 86.5% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.60 | 49.0 | 4.02e-01 | 90.1% | 88.5% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 42.0 | 4.16e-01 | 76.1% | 81.6% |
| 1h6qA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.58 | 50.0 | 3.79e-01 | 94.4% | 92.9% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 39.0 | 3.78e-01 | 71.8% | 94.9% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.55 | 37.0 | 3.63e-01 | 98.6% | 63.6% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 40.0 | 3.43e-01 | 77.5% | 49.1% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.54 | 41.0 | 3.69e-01 | 85.9% | 59.6% |
| 2k77A00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 41.0 | 3.28e-01 | 83.1% | 80.0% |
| 3efoB01 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.53 | 38.0 | 3.09e-01 | 77.5% | 88.1% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 40.0 | 3.37e-01 | 81.7% | 91.9% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 38.0 | 3.38e-01 | 81.7% | 72.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3293474 | 143.1.1.1 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABP | 0.70 | 59.0 | 5.81e-01 | 100.0% | 89.3% |
| 3300274 | 143.1.1.2 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 | 0.68 | 51.0 | 5.31e-01 | 91.5% | 87.7% |
| 2843606 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.68 | 57.0 | 5.46e-01 | 100.0% | 80.7% |
| 4171219 | 304.9.1.89 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › MLLE | 0.66 | 58.0 | 5.32e-01 | 100.0% | 78.9% |
| 3700536 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.64 | 54.0 | 4.09e-01 | 94.4% | 92.5% |
| 3288850 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.64 | 48.0 | 4.27e-01 | 80.3% | 94.0% |
| 3977977 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 51.0 | 3.69e-01 | 88.7% | 44.9% |
| 3948493 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 50.0 | 3.68e-01 | 88.7% | 44.9% |
| 4652715 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.63 | 46.0 | 4.11e-01 | 78.9% | 92.4% |
| 4949024 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.61 | 52.0 | 3.61e-01 | 98.6% | 40.5% |
| 4057034 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.61 | 48.0 | 4.77e-01 | 87.3% | 90.7% |
| 3814942 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.61 | 36.0 | 3.70e-01 | 98.6% | 60.0% |
| 4931613 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.60 | 47.0 | 3.51e-01 | 85.9% | 99.5% |
| 5028679 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 43.0 | 3.89e-01 | 77.5% | 79.6% |
| 5046151 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.60 | 47.0 | 3.50e-01 | 84.5% | 53.1% |
| 3601304 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.60 | 50.0 | 3.38e-01 | 100.0% | 91.3% |
| 3265419 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.59 | 44.0 | 4.30e-01 | 81.7% | 97.5% |
| 3601971 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.59 | 47.0 | 3.66e-01 | 88.7% | 92.7% |
| 4678433 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.58 | 46.0 | 3.40e-01 | 87.3% | 98.5% |
| 3366065 | 148.1.3.302 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PRA1 | 0.58 | 44.0 | 3.78e-01 | 81.7% | 75.7% |
| 4999712 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.58 | 47.0 | 3.84e-01 | 91.5% | 100.0% |
| 5065426 | 7558.1.1.3 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Lip_A_acyltrans | 0.57 | 50.0 | 3.35e-01 | 97.2% | 98.5% |
| 3341058 | 6155.1.1.6 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 | 0.56 | 39.0 | 3.25e-01 | 74.6% | 60.0% |
| 4198250 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 44.0 | 4.48e-01 | 87.3% | 90.0% |
| 3988076 | 3646.1.1.0 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters | 0.55 | 44.0 | 3.25e-01 | 91.5% | 41.0% |