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OR359401.1__WNO28936.1__vBKpnMJEC_0049__00049

Bact-Vir

OR359401.1__WNO28936.1__vBKpnMJEC_0049__00049

Identity

Accession:
OR359401 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_vB_KpnM-JEC

TaxID: 3075854

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-75
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 5.04e-01 100.0% 91.3%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 59.0 5.03e-01 95.5% 97.3%
4dgkA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 57.0 4.41e-01 95.5% 76.7%
4wctA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 58.0 3.96e-01 95.5% 63.6%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 57.0 4.08e-01 95.5% 46.8%
2aqjA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 56.0 3.35e-01 95.5% 40.8%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 56.0 3.81e-01 95.5% 65.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.24e-01 100.0% 100.0%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 56.0 3.83e-01 95.5% 69.5%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 57.0 4.62e-01 98.5% 95.5%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 57.0 5.61e-01 100.0% 89.2%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 55.0 4.73e-01 95.5% 97.3%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.25e-01 100.0% 98.2%
4rslA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 54.0 3.81e-01 95.5% 66.4%
3fg2P02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 4.61e-01 100.0% 97.6%
5jriA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 54.0 4.61e-01 95.5% 95.5%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 5.18e-01 100.0% 100.0%
3ef6A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 4.64e-01 100.0% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.51e-01 100.0% 73.5%
2culA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 52.0 3.67e-01 95.5% 52.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.78e-01 100.0% 81.4%
1q1rA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 4.33e-01 98.5% 98.5%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.61e-01 100.0% 80.9%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.48e-01 100.0% 72.5%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.29e-01 85.1% 88.7%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.84e-01 80.6% 81.8%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 45.0 4.29e-01 88.1% 85.9%
2jn4A00 2.40.50.240 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like 0.53 39.0 3.95e-01 92.5% 78.8%
1iq4A00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 38.0 2.96e-01 80.6% 98.9%
1vmoA00 2.100.10.20 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Vitelline membrane outer layer protein I (VOMI) 0.53 46.0 3.52e-01 100.0% 92.6%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 39.0 4.05e-01 82.1% 95.2%
2jz4A01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 43.0 3.44e-01 100.0% 90.5%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 4.09e-01 86.6% 94.0%
1p8jA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 42.0 2.81e-01 100.0% 95.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1759163 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 60.0 5.06e-01 98.5% 95.7%
3895018 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.67 55.0 5.63e-01 100.0% 95.4%
3678875 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 58.0 4.59e-01 98.5% 90.0%
3391437 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 58.0 4.69e-01 100.0% 92.6%
4964081 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 57.0 4.86e-01 98.5% 96.5%
5063273 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 57.0 4.69e-01 100.0% 94.6%
4102382 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.66 56.0 4.51e-01 98.5% 91.4%
3444633 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 58.0 4.53e-01 100.0% 84.8%
4984181 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 56.0 4.54e-01 98.5% 91.9%
3721156 2003.1.2.60 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 0.66 55.0 3.33e-01 95.5% 51.2%
2131270 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 54.0 4.00e-01 94.0% 43.5%
5009419 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 56.0 4.62e-01 98.5% 96.8%
4333277 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.65 54.0 4.95e-01 100.0% 70.0%
3181649 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 55.0 4.35e-01 98.5% 86.0%
4105828 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 56.0 4.60e-01 100.0% 93.8%
4949319 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 56.0 4.32e-01 100.0% 70.6%
3831288 2003.1.2.129 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase, Pyr_redox_2 0.65 55.0 4.42e-01 98.5% 90.7%
4030965 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 56.0 4.62e-01 100.0% 98.4%
5005984 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 56.0 4.33e-01 100.0% 80.0%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.64 53.0 3.52e-01 95.5% 67.3%
4970146 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 55.0 4.55e-01 98.5% 97.6%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.40e-01 100.0% 70.0%
2756225 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.63 53.0 3.97e-01 95.5% 87.4%
5045226 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 53.0 4.42e-01 98.5% 96.8%
4945474 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 4.15e-01 88.1% 72.5%
3282680 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 52.0 4.27e-01 95.5% 97.7%
5013291 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 54.0 4.32e-01 100.0% 80.0%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.59 39.0 4.37e-01 92.5% 92.0%
5032556 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.59 36.0 3.52e-01 91.0% 56.0%
3959816 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 42.0 2.75e-01 91.0% 16.3%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.57 42.0 4.06e-01 100.0% 70.7%
3178002 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.56 39.0 2.96e-01 74.6% 53.4%
3962096 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.32e-01 85.1% 54.1%
3196919 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.52 43.0 2.75e-01 95.5% 45.2%
5037861 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 38.0 3.72e-01 85.1% 74.7%