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OR359401.1__WNO29084.1__vBKpnMJEC_0197__00197

Bact-Vir

OR359401.1__WNO29084.1__vBKpnMJEC_0197__00197

Identity

Accession:
OR359401 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_vB_KpnM-JEC

TaxID: 3075854

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26902.1 best Phage_T4_Y12K 81.7 5.30e-23 100.0% 71.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 51.0 3.88e-01 100.0% 32.0%
4bwcA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.65 36.0 3.69e-01 100.0% 52.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.85e-01 100.0% 46.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 47.0 3.46e-01 100.0% 29.3%
1tocR02 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.61 33.0 3.35e-01 96.4% 48.3%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 42.0 3.54e-01 100.0% 40.4%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 43.0 2.81e-01 76.8% 17.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.80e-01 100.0% 46.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 51.0 4.34e-01 100.0% 94.8%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.67e-01 100.0% 39.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 4.10e-01 100.0% 53.2%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 41.0 2.73e-01 76.8% 16.5%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.50e-01 100.0% 34.4%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 47.0 3.69e-01 100.0% 42.3%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.48e-01 100.0% 37.0%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 45.0 3.48e-01 100.0% 35.9%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.28e-01 100.0% 31.4%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.56 41.0 2.78e-01 100.0% 20.1%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.34e-01 98.2% 48.6%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.20e-01 100.0% 27.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.58e-01 100.0% 44.4%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 44.0 3.84e-01 100.0% 65.7%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.54 45.0 3.79e-01 100.0% 59.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.54 47.0 4.15e-01 100.0% 88.1%
2ypjA00 2.60.120.1070 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.30e-01 100.0% 41.0%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.53 45.0 2.77e-01 100.0% 16.0%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 44.0 3.61e-01 100.0% 67.8%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 33.0 3.73e-01 75.0% 100.0%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 41.0 3.41e-01 96.4% 78.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2323826 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.77 60.0 5.36e-01 100.0% 61.5%
3567641 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.75 59.0 5.05e-01 100.0% 53.3%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.73 55.0 4.25e-01 100.0% 36.2%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 52.0 5.38e-01 100.0% 92.0%
3959955 304.163.1.3 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.65 45.0 4.92e-01 100.0% 93.3%
4178430 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.62 43.0 3.16e-01 71.4% 29.0%
3593981 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.61 51.0 4.19e-01 100.0% 51.4%
3414928 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.60 46.0 4.10e-01 100.0% 56.8%
3607227 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.59 45.0 4.68e-01 96.4% 96.0%
3271532 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.58 43.0 3.09e-01 80.4% 30.9%
4486829 3662.1.1.4 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.58 41.0 3.25e-01 76.8% 41.6%
2559772 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.58 48.0 3.89e-01 100.0% 70.2%
3290970 2492.1.1.45 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26947 0.57 45.0 3.65e-01 100.0% 43.5%
4028716 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 40.0 3.12e-01 76.8% 31.9%
5010420 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.56 41.0 3.45e-01 100.0% 42.6%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 41.0 3.79e-01 100.0% 60.0%
4942796 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 46.0 3.84e-01 100.0% 50.9%
3923581 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.42e-01 100.0% 45.0%
400603 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.55 44.0 3.38e-01 100.0% 37.3%
3487526 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.55 46.0 2.89e-01 100.0% 19.1%
4018051 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 45.0 3.43e-01 100.0% 37.1%
3644933 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 47.0 2.73e-01 100.0% 18.3%
3208632 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.37e-01 100.0% 96.4%
3589173 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.54 42.0 3.38e-01 100.0% 42.6%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.02e-01 98.2% 78.3%
3897681 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 4.29e-01 100.0% 86.7%
3494162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.64e-01 100.0% 48.7%
3193904 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.52 41.0 3.25e-01 100.0% 38.5%
3502149 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 45.0 2.92e-01 100.0% 21.5%
3908673 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.52 42.0 3.24e-01 100.0% 38.5%
5044440 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 43.0 3.46e-01 100.0% 47.2%
4015965 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 38.0 3.16e-01 100.0% 40.0%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.59e-01 98.2% 62.7%
3232234 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.50 39.0 3.03e-01 87.5% 88.8%