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OR359401.1__WNO29110.1__vBKpnMJEC_0223__00223
Bact-VirOR359401.1__WNO29110.1__vBKpnMJEC_0223__00223
Identity
- Accession:
- OR359401 ↗
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Jiaodavirus›
Klebsiella_phage_vB_KpnM-JEC
TaxID: 3075854
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
Domain cluster:
rep: NC_070780.1__YP_010651107.1__PP428_gp270__00270__D2-75
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.67 | 48.0 | 4.98e-01 | 100.0% | 81.0% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.65 | 58.0 | 3.87e-01 | 98.5% | 55.3% |
| 4xsgB00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.64 | 49.0 | 3.59e-01 | 87.9% | 99.5% |
| 5cfjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.63 | 55.0 | 4.37e-01 | 100.0% | 62.9% |
| 1kgqA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.63 | 41.0 | 3.10e-01 | 100.0% | 25.9% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 51.0 | 4.12e-01 | 100.0% | 59.7% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 50.0 | 4.02e-01 | 100.0% | 56.1% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.59 | 45.0 | 3.49e-01 | 89.4% | 36.4% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 49.0 | 4.08e-01 | 100.0% | 63.6% |
| 2azwA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 51.0 | 4.01e-01 | 100.0% | 57.5% |
| 1qs1A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 44.0 | 3.27e-01 | 89.4% | 98.0% |
| 2j3xA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 43.0 | 3.07e-01 | 84.8% | 53.7% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 39.0 | 2.97e-01 | 90.9% | 27.8% |
| 3exqA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 45.0 | 3.71e-01 | 100.0% | 59.0% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.54 | 45.0 | 4.01e-01 | 98.5% | 63.5% |
| 3wp4A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.54 | 42.0 | 2.95e-01 | 87.9% | 32.9% |
| 3ejkA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.08e-01 | 80.3% | 75.8% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.53 | 43.0 | 3.60e-01 | 98.5% | 50.4% |
| 2x8xX03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 45.0 | 4.25e-01 | 100.0% | 92.8% |
| 1m4wA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 41.0 | 3.01e-01 | 89.4% | 36.5% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 44.0 | 3.59e-01 | 100.0% | 91.1% |
| 1vh7A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 36.0 | 2.54e-01 | 77.3% | 56.4% |
| 2vg9A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.51 | 39.0 | 2.91e-01 | 90.9% | 53.5% |
| 3kzwA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 36.0 | 2.81e-01 | 77.3% | 74.1% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 41.0 | 2.97e-01 | 100.0% | 82.5% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.78 | 56.0 | 6.12e-01 | 100.0% | 90.9% |
| 5049818 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.78 | 60.0 | 5.28e-01 | 100.0% | 56.8% |
| 3180421 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.74 | 56.0 | 5.56e-01 | 100.0% | 77.1% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.73 | 57.0 | 6.01e-01 | 100.0% | 93.3% |
| 3731145 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.69 | 57.0 | 4.56e-01 | 98.5% | 47.2% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.68 | 58.0 | 5.35e-01 | 100.0% | 73.5% |
| 3784453 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.65 | 58.0 | 4.36e-01 | 100.0% | 73.8% |
| 3362676 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.64 | 53.0 | 4.16e-01 | 100.0% | 43.6% |
| 5049040 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.62 | 48.0 | 4.07e-01 | 98.5% | 50.9% |
| 4958890 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.62 | 46.0 | 4.35e-01 | 92.4% | 66.3% |
| 5001647 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 49.0 | 4.15e-01 | 100.0% | 53.2% |
| 1173463 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.61 | 46.0 | 4.32e-01 | 87.9% | 66.7% |
| 3247514 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.61 | 47.0 | 4.05e-01 | 98.5% | 53.3% |
| 3224319 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.60 | 30.0 | 2.99e-01 | 98.5% | 40.0% |
| 3512351 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 48.0 | 4.26e-01 | 98.5% | 61.1% |
| 4946739 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.60 | 44.0 | 4.48e-01 | 100.0% | 81.5% |
| 2146540 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.60 | 51.0 | 4.11e-01 | 100.0% | 60.4% |
| 4021618 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 52.0 | 4.87e-01 | 98.5% | 80.0% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 45.0 | 4.27e-01 | 87.9% | 68.8% |
| 4934398 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 49.0 | 4.06e-01 | 100.0% | 64.4% |
| 4967823 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.58 | 53.0 | 5.07e-01 | 100.0% | 90.7% |
| 3789481 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.58 | 51.0 | 3.86e-01 | 100.0% | 72.1% |
| 4120496 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.58 | 32.0 | 3.06e-01 | 100.0% | 45.3% |
| 4931129 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.57 | 44.0 | 4.11e-01 | 90.9% | 67.1% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 42.0 | 2.77e-01 | 81.8% | 19.4% |
| 3380296 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.56 | 41.0 | 3.28e-01 | 78.8% | 43.8% |
| 4061290 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.55 | 44.0 | 4.33e-01 | 100.0% | 82.2% |
| 119488 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.54 | 45.0 | 4.10e-01 | 100.0% | 87.4% |
| 4013718 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 44.0 | 3.40e-01 | 100.0% | 65.7% |
| 3469443 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 34.0 | 3.50e-01 | 72.7% | 70.0% |
| 3669520 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 46.0 | 4.07e-01 | 100.0% | 97.0% |
| 3999853 | 331.2.1.7 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung | 0.53 | 40.0 | 3.13e-01 | 81.8% | 49.0% |
| 2770850 | 10.1.1.7 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_11 | 0.53 | 39.0 | 2.77e-01 | 100.0% | 22.9% |
| 3652079 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 41.0 | 3.52e-01 | 100.0% | 52.2% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 41.0 | 4.21e-01 | 100.0% | 90.8% |
| 3290698 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 32.0 | 2.96e-01 | 83.3% | 47.1% |
| 4989977 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.40e-01 | 71.2% | 87.1% |