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OR387861.1__WNI00515.1__vbSpy7_15__00015

Bact-Vir

OR387861.1__WNI00515.1__vbSpy7_15__00015

Identity

Accession:
OR387861 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_vb_Spy_7

TaxID: 3075865

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-70
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.63 32.0 3.47e-01 97.1% 56.7%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.62 32.0 3.40e-01 72.5% 51.6%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.23e-01 79.7% 48.4%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.56 29.0 2.79e-01 84.1% 44.9%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.12e-01 78.3% 48.1%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.12e-01 79.7% 49.4%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 3.03e-01 78.3% 48.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3340613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.22e-01 73.9% 56.2%
3384073 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 4.04e-01 73.9% 52.5%
3329019 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 36.0 4.11e-01 76.8% 80.0%
4942841 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 32.0 2.68e-01 89.9% 33.9%
4414940 5.1.2.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_68 0.53 44.0 2.66e-01 98.6% 12.2%
5056505 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 46.0 3.81e-01 94.2% 67.0%
4403516 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 45.0 3.73e-01 97.1% 60.5%
3227441 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.52 41.0 4.35e-01 89.9% 96.7%
3368815 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 3.71e-01 94.2% 67.0%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 44.0 3.42e-01 94.2% 56.0%
4532543 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 3.54e-01 97.1% 52.9%
5051087 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 3.78e-01 95.7% 68.2%
4661346 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 3.46e-01 95.7% 51.7%
4982570 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.51 32.0 3.27e-01 84.1% 64.3%
3222769 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.51 37.0 2.36e-01 76.8% 21.8%
4942428 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 44.0 3.52e-01 95.7% 55.6%
4191334 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 43.0 3.46e-01 94.2% 55.2%