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OR387861.1__WNI00531.1__vbSpy7_31__00031

Bact-Vir

OR387861.1__WNI00531.1__vbSpy7_31__00031

Identity

Accession:
OR387861 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.67 52.0 4.17e-01 88.2% 61.1%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.67 49.0 5.08e-01 100.0% 93.5%
2lkzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 50.0 4.40e-01 98.0% 96.5%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 49.0 3.16e-01 94.1% 57.7%
1i07A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 3.87e-01 72.5% 61.0%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.59 46.0 3.02e-01 90.2% 74.0%
7eu1A02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.59 43.0 3.25e-01 80.4% 95.5%
5troA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 47.0 2.94e-01 92.2% 81.7%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 2.82e-01 82.4% 42.7%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.58 39.0 3.29e-01 70.6% 62.2%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 47.0 4.07e-01 100.0% 87.6%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 3.68e-01 82.4% 58.1%
5uzgA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 46.0 4.02e-01 100.0% 90.0%
1p1tA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 46.0 3.90e-01 100.0% 78.8%
3gfoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 2.96e-01 90.2% 61.0%
7wezA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 47.0 4.23e-01 98.0% 100.0%
3hi9D00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 45.0 4.05e-01 100.0% 92.7%
3aluA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 44.0 3.11e-01 86.3% 69.4%
5zwnQ01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 46.0 4.06e-01 98.0% 97.5%
5lslA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 44.0 4.03e-01 100.0% 98.7%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.03e-01 86.3% 82.5%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 2.66e-01 86.3% 48.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 3.81e-01 92.2% 59.2%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.35e-01 80.4% 70.5%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 45.0 2.74e-01 100.0% 44.5%
5mmjv00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 44.0 3.97e-01 100.0% 96.2%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 40.0 2.63e-01 84.3% 93.5%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.53 37.0 2.58e-01 100.0% 20.5%
4iufA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 44.0 3.97e-01 100.0% 96.1%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 40.0 3.30e-01 84.3% 92.2%
7vufD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.95e-01 94.1% 48.8%
7tg5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.33e-01 100.0% 43.0%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 45.0 2.90e-01 100.0% 67.9%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 39.0 3.11e-01 86.3% 55.4%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 40.0 2.89e-01 88.2% 94.5%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.52 37.0 3.83e-01 100.0% 83.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 41.0 3.60e-01 100.0% 98.9%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 37.0 3.36e-01 100.0% 56.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031645 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.93 80.0 8.11e-01 100.0% 94.0%
4991614 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.79 60.0 5.89e-01 100.0% 76.4%
4927873 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 61.0 5.78e-01 100.0% 73.3%
3592220 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.77 60.0 5.36e-01 100.0% 59.5%
3712471 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.77 60.0 5.46e-01 100.0% 63.8%
4956454 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 57.0 5.62e-01 100.0% 76.4%
4981952 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 60.0 6.07e-01 100.0% 88.0%
3595897 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.75 55.0 5.43e-01 100.0% 72.7%
5024995 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 58.0 5.73e-01 100.0% 84.9%
5033467 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 57.0 5.89e-01 100.0% 93.8%
4967982 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.72 55.0 5.83e-01 98.0% 97.7%
3593781 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 56.0 5.52e-01 100.0% 80.0%
4230268 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.71 55.0 5.71e-01 98.0% 97.8%
3266009 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.70 51.0 4.98e-01 100.0% 72.7%
3191807 4076.3.1.6 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.69 59.0 5.29e-01 100.0% 80.0%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 51.0 5.35e-01 100.0% 97.8%
5009 4076.3.1.2 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.67 49.0 5.01e-01 100.0% 87.8%
3705471 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.66 50.0 4.97e-01 100.0% 78.2%
4952672 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 54.0 5.28e-01 100.0% 83.6%
4593896 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 48.0 5.04e-01 98.0% 93.3%
3703797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.66 50.0 4.94e-01 100.0% 78.2%
3251095 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.66 50.0 4.82e-01 100.0% 71.7%
4460255 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.65 49.0 4.93e-01 100.0% 86.0%
4026963 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.65 44.0 3.20e-01 70.6% 87.9%
4939553 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 47.0 4.78e-01 100.0% 86.0%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.63 51.0 4.70e-01 94.1% 98.6%
3243536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.53e-01 100.0% 62.4%
4961842 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 50.0 4.43e-01 100.0% 97.6%
5041306 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 49.0 4.44e-01 100.0% 97.5%
3917081 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 51.0 4.22e-01 100.0% 80.0%
5038458 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.61 47.0 4.80e-01 94.1% 96.0%
5023430 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.60 48.0 4.69e-01 100.0% 81.7%
2390534 2002.1.1.139 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE 0.60 48.0 3.03e-01 90.2% 26.3%
3236725 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 48.0 3.18e-01 100.0% 54.2%
3859098 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 47.0 2.85e-01 88.2% 50.6%
3720263 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.59 47.0 2.76e-01 90.2% 37.5%
3475881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.64e-01 100.0% 72.9%
5070158 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.58 48.0 3.02e-01 100.0% 30.6%
5035097 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.58 44.0 4.54e-01 98.0% 100.0%
4951587 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.58 42.0 4.21e-01 100.0% 86.0%
3957225 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 38.0 2.79e-01 88.2% 25.0%
4934987 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.56 40.0 4.12e-01 98.0% 93.3%
5001806 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.56 40.0 4.10e-01 100.0% 89.6%
4083057 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.55 40.0 4.06e-01 100.0% 86.0%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 45.0 3.91e-01 96.1% 60.0%
3807732 10.12.1.51 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.54 37.0 2.31e-01 72.5% 14.5%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 45.0 4.32e-01 96.1% 81.4%
3932304 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 2.90e-01 84.3% 70.6%
4129961 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.53 42.0 2.94e-01 100.0% 64.3%
3616199 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 41.0 2.82e-01 100.0% 61.9%
3276865 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 43.0 3.54e-01 100.0% 48.0%
3264208 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 41.0 3.54e-01 100.0% 79.0%
3937794 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 42.0 2.58e-01 88.2% 56.7%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.52 44.0 3.91e-01 96.1% 65.3%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.52 44.0 4.24e-01 96.1% 84.5%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.52 43.0 4.16e-01 96.1% 81.7%
4046572 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.52 38.0 3.64e-01 100.0% 66.2%
3652643 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 38.0 3.54e-01 82.4% 85.7%
387703 636.1.1.1 alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › IpaB_EvcA 0.52 40.0 2.80e-01 92.2% 24.7%
3411973 1116.1.1.2 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.51 40.0 2.80e-01 92.2% 78.0%
3804439 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.51 36.0 2.73e-01 76.5% 48.7%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.51 43.0 4.00e-01 96.1% 78.5%
3629138 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 38.0 3.61e-01 82.4% 76.7%