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OR397124.1__WMU95122.1__ADOKEBJH_00026__00025

Bact-Vir

OR397124.1__WMU95122.1__ADOKEBJH_00026__00025

Identity

Accession:
OR397124 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-62
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 48.7 1.40e-12 89.3% 40.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 45.0 3.61e-01 80.4% 48.2%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.60 44.0 2.82e-01 78.6% 29.7%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 38.0 3.15e-01 75.0% 56.5%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 41.0 2.69e-01 87.5% 85.8%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.45e-01 80.4% 37.6%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 42.0 2.68e-01 92.9% 85.8%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 35.0 2.91e-01 73.2% 79.6%
6tmfI00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.51 34.0 2.37e-01 96.4% 18.2%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.51 42.0 3.90e-01 98.2% 71.8%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.50 38.0 2.70e-01 85.7% 99.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033119 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.91 81.0 6.54e-01 96.4% 62.0%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.84 75.0 5.43e-01 100.0% 40.0%
3968916 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.76 56.0 4.52e-01 80.4% 41.9%
3163642 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.76 58.0 4.55e-01 80.4% 41.8%
3944712 101.1.9.40 alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.74 62.0 5.16e-01 98.2% 59.0%
4974760 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 46.0 3.17e-01 87.5% 22.1%
5081199 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 45.0 3.41e-01 98.2% 30.7%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 43.0 3.33e-01 100.0% 33.1%
5077851 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 3.78e-01 96.4% 88.0%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.60 40.0 3.18e-01 76.8% 32.0%
4940950 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 37.0 3.33e-01 75.0% 42.5%
5001284 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 51.0 3.74e-01 100.0% 73.1%
5005295 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.56 38.0 2.99e-01 71.4% 37.7%
3708912 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.56e-01 89.3% 33.7%
4317544 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 40.0 3.38e-01 78.6% 83.0%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 34.0 3.10e-01 75.0% 41.7%
3449579 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 39.0 2.81e-01 80.4% 84.9%
4955301 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.55 43.0 2.77e-01 89.3% 19.6%
3735883 2004.1.1.25 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C,SnAC 0.55 47.0 2.69e-01 100.0% 20.3%
3585734 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.54 37.0 2.72e-01 92.9% 26.7%
5064876 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 43.0 3.28e-01 100.0% 34.2%
3597336 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 42.0 2.90e-01 91.1% 66.7%
3799597 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 41.0 3.58e-01 83.9% 82.4%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 43.0 3.25e-01 96.4% 43.9%
3991544 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 40.0 3.38e-01 83.9% 64.0%
3920672 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 40.0 3.48e-01 83.9% 74.4%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 39.0 3.21e-01 83.9% 63.5%
3958077 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 38.0 2.84e-01 78.6% 41.8%
4987387 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.52 33.0 2.28e-01 71.4% 18.4%
3933688 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 41.0 2.69e-01 100.0% 92.8%
3382264 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.52 41.0 3.07e-01 94.6% 84.2%
3231167 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.51 41.0 2.88e-01 94.6% 25.4%
3795670 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.51 41.0 2.83e-01 94.6% 24.2%
3257822 4015.1.1.1 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.51 40.0 2.60e-01 89.3% 47.6%
4087732 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.50 40.0 2.44e-01 98.2% 50.3%
4534745 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 39.0 2.83e-01 87.5% 38.9%
3242499 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 41.0 2.77e-01 92.9% 61.8%
3590189 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.50 37.0 2.82e-01 83.9% 53.8%
D2 medium residues 70-131
PDB
Domain cluster: representative
D3 medium residues 132-204
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 46.0 4.21e-01 78.1% 97.0%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 51.0 4.71e-01 90.4% 75.5%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.61 44.0 3.70e-01 97.3% 45.2%
4lvpA00 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.60 47.0 4.09e-01 90.4% 66.9%
2hcfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 35.0 3.65e-01 100.0% 63.1%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.59 47.0 4.25e-01 87.7% 77.2%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.58 41.0 4.39e-01 94.5% 93.1%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 48.0 4.57e-01 93.2% 78.4%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 48.0 3.74e-01 91.8% 63.1%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.57 49.0 4.37e-01 100.0% 87.4%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.57 49.0 4.14e-01 98.6% 81.6%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.56 45.0 3.63e-01 87.7% 48.6%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.56 45.0 3.81e-01 91.8% 79.4%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.55 43.0 4.48e-01 87.7% 92.5%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 43.0 3.95e-01 86.3% 84.7%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.55 44.0 3.61e-01 90.4% 81.8%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.54 36.0 2.81e-01 79.5% 30.2%
2qa1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.01e-01 98.6% 49.8%
3bhgA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 43.0 3.79e-01 94.5% 69.6%
2mgxA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.52 43.0 3.66e-01 95.9% 71.0%
2x8aA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 44.0 4.33e-01 98.6% 91.3%
3qwlA02 1.10.8.680 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 0.51 40.0 3.93e-01 84.9% 88.3%
3otgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 37.0 2.74e-01 80.8% 68.8%
5v5nA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 39.0 2.89e-01 87.7% 59.9%
3sqnA03 1.10.1790.30 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.50 43.0 3.69e-01 95.9% 74.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501339 148.1.3.392 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RP853 0.66 50.0 4.93e-01 93.2% 76.2%
3794726 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.65 43.0 4.04e-01 87.7% 55.6%
4929027 518.1.1.1 alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.63 48.0 5.09e-01 87.7% 92.3%
4027497 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.62 47.0 5.05e-01 84.9% 100.0%
5043629 601.7.1.34 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.59 46.0 4.45e-01 87.7% 95.2%
3426994 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 48.0 4.20e-01 100.0% 58.3%
4107589 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.59 49.0 4.25e-01 93.2% 71.3%
3316440 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 46.0 3.41e-01 83.6% 43.3%
3842608 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.58 46.0 4.17e-01 86.3% 68.0%
3966804 148.1.3.238 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.58 44.0 4.72e-01 94.5% 98.3%
5071125 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.58 46.0 4.13e-01 87.7% 73.3%
320075 632.6.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Epsilon_antitox 0.57 45.0 4.21e-01 87.7% 75.8%
3495642 193.1.1.0 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.57 48.0 3.95e-01 97.3% 77.1%
3748949 544.1.1.0 alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.57 46.0 4.05e-01 89.0% 92.7%
5079638 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.56 45.0 4.07e-01 87.7% 77.0%
4986197 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 45.0 4.25e-01 93.2% 85.6%
5035870 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 43.0 3.84e-01 87.7% 73.3%
4246339 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.54 40.0 3.59e-01 82.2% 96.4%
3173665 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.53 44.0 3.64e-01 100.0% 69.5%
3489734 197.1.1.0 alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.53 38.0 3.73e-01 76.7% 96.2%
4671888 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 45.0 3.14e-01 100.0% 74.4%
3321394 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.51 38.0 2.56e-01 80.8% 19.4%
4131458 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 39.0 2.87e-01 87.7% 34.5%
5079773 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.50 40.0 3.00e-01 94.5% 94.5%