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OR400517.1__WNO24816.1__KFBOJEHC_00131__00102

Bact-Vir

OR400517.1__WNO24816.1__KFBOJEHC_00131__00102

Identity

Accession:
OR400517 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Salmonella_phage_PRF-SP12

TaxID: 3074847

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-97
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 64.0 5.73e-01 84.9% 99.1%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 56.0 5.28e-01 74.4% 100.0%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 55.0 5.38e-01 75.6% 100.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 57.0 5.40e-01 77.9% 97.0%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 56.0 5.23e-01 76.7% 100.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 56.0 5.53e-01 77.9% 98.9%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.74 51.0 4.83e-01 72.1% 100.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 52.0 4.94e-01 74.4% 93.1%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 53.0 4.93e-01 75.6% 100.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 53.0 4.59e-01 79.1% 99.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.68 47.0 5.09e-01 72.1% 95.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.67 41.0 3.73e-01 77.9% 44.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 4.76e-01 73.3% 97.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 5.15e-01 82.6% 97.6%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 4.13e-01 72.1% 94.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 42.0 3.80e-01 76.7% 89.5%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 2.93e-01 83.7% 56.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 37.0 3.98e-01 72.1% 78.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 36.0 3.99e-01 73.3% 82.1%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.75e-01 70.9% 92.8%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 44.0 3.72e-01 84.9% 82.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 37.0 3.05e-01 70.9% 45.8%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 35.0 3.82e-01 73.3% 78.9%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.55 38.0 2.97e-01 72.1% 63.7%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 38.0 3.86e-01 80.2% 72.4%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 3.15e-01 70.9% 75.7%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.94e-01 84.9% 97.2%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 31.0 3.24e-01 77.9% 61.3%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 39.0 3.57e-01 77.9% 80.5%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.09e-01 83.7% 36.2%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 37.0 2.79e-01 73.3% 88.0%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.41e-01 75.6% 76.2%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 3.38e-01 75.6% 73.2%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.74e-01 75.6% 76.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 37.0 2.80e-01 73.3% 83.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.90e-01 94.2% 77.2%
1j6uA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 36.0 2.77e-01 70.9% 76.6%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 37.0 3.04e-01 75.6% 51.5%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.49e-01 74.4% 48.7%
1j72A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 36.0 3.37e-01 73.3% 73.4%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 39.0 3.36e-01 81.4% 59.9%
3bn8A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.51 37.0 3.37e-01 76.7% 75.0%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.50 38.0 3.10e-01 81.4% 50.0%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.49e-01 93.0% 50.6%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 40.0 2.88e-01 90.7% 57.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3773509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.83 56.0 6.66e-01 74.4% 100.0%
4186865 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.82 68.0 4.60e-01 88.4% 37.9%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 61.0 5.12e-01 79.1% 70.7%
4202484 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 67.0 5.25e-01 88.4% 63.5%
3402011 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.79 57.0 5.40e-01 74.4% 99.0%
3710438 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.78 58.0 5.18e-01 76.7% 92.2%
3843072 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.77 62.0 4.28e-01 84.9% 36.1%
3865191 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.77 58.0 5.33e-01 79.1% 88.2%
3506540 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.77 59.0 5.28e-01 80.2% 98.3%
3916003 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.77 58.0 5.23e-01 79.1% 86.1%
3231448 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.77 62.0 4.87e-01 84.9% 58.8%
3596153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 58.0 5.33e-01 79.1% 88.9%
3717655 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.76 56.0 5.29e-01 76.7% 99.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 54.0 4.88e-01 74.4% 92.2%
4488977 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 70.0 5.86e-01 100.0% 89.3%
3263571 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 70.0 5.43e-01 100.0% 72.6%
3256843 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 60.0 5.63e-01 84.9% 81.9%
3570527 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 66.0 5.69e-01 95.3% 90.0%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 61.0 5.33e-01 88.4% 81.5%
4076629 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.75 62.0 4.24e-01 88.4% 37.1%
3253063 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 53.0 4.74e-01 73.3% 85.2%
3501913 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 5.51e-01 95.3% 72.9%
3174440 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 63.0 5.04e-01 91.9% 67.9%
3742641 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.74 57.0 5.29e-01 82.6% 91.8%
3887124 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 66.0 5.14e-01 96.5% 61.7%
4012071 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 67.0 4.27e-01 98.8% 30.9%
3469923 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 52.0 5.09e-01 74.4% 100.0%
4543309 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 63.0 5.66e-01 91.9% 93.0%
3718868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 55.0 4.60e-01 79.1% 69.0%
3538314 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 64.0 5.70e-01 94.2% 89.2%
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 59.0 5.36e-01 87.2% 91.3%
3685407 220.1.1.215 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_35 0.73 52.0 4.46e-01 73.3% 79.2%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 57.0 5.13e-01 84.9% 89.2%
3921576 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 59.0 5.01e-01 88.4% 85.0%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 55.0 5.27e-01 81.4% 100.0%
3627615 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.72 58.0 4.85e-01 86.0% 74.5%
3606311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 52.0 5.54e-01 75.6% 94.7%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 52.0 5.08e-01 75.6% 73.7%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.72 60.0 4.20e-01 88.4% 40.0%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.72 60.0 5.56e-01 90.7% 100.0%
5014255 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.72 54.0 4.67e-01 80.2% 71.9%
4121439 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.72 65.0 4.20e-01 100.0% 33.0%
3583844 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.71 54.0 4.47e-01 80.2% 88.7%
3531166 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 60.0 5.28e-01 90.7% 91.2%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 50.0 5.63e-01 73.3% 95.4%
3626366 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 4.98e-01 82.6% 95.5%
2445189 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 55.0 4.85e-01 83.7% 92.6%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 55.0 4.79e-01 87.2% 89.6%
3570692 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 58.0 5.24e-01 91.9% 92.2%
3894778 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.68 55.0 5.09e-01 87.2% 79.1%
3245418 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 49.0 4.55e-01 76.7% 90.9%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 4.68e-01 87.2% 87.7%
1177137 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.66 52.0 4.94e-01 82.6% 78.0%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.66 56.0 5.22e-01 94.2% 99.1%
3483205 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.66 59.0 5.18e-01 97.7% 98.4%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.66 51.0 4.74e-01 83.7% 90.9%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.65 49.0 4.53e-01 79.1% 73.6%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.64 45.0 4.07e-01 72.1% 100.0%
5031724 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.60 34.0 3.38e-01 80.2% 52.2%
4880118 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 37.0 4.08e-01 72.1% 78.6%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 41.0 3.33e-01 76.7% 40.0%
4993646 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 36.0 3.16e-01 75.6% 41.5%
4049072 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.55 39.0 3.65e-01 74.4% 75.5%
3388321 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 38.0 2.95e-01 72.1% 80.5%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.55 40.0 3.29e-01 76.7% 78.8%
3699621 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 38.0 2.87e-01 72.1% 48.6%
3227955 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.54 35.0 2.51e-01 77.9% 21.9%
3240286 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 3.44e-01 74.4% 83.2%
5051943 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 36.0 2.72e-01 73.3% 78.3%
4075794 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 37.0 2.78e-01 75.6% 77.2%