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OR413575.1__WNT47188.1__SPLA10_PHROGS00127__00127

Bact-Vir

OR413575.1__WNT47188.1__SPLA10_PHROGS00127__00127

Identity

Accession:
OR413575 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 54.0 5.05e-01 96.6% 72.5%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 52.0 5.31e-01 97.8% 89.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 5.22e-01 94.4% 89.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 5.12e-01 97.8% 87.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.63 57.0 4.96e-01 100.0% 89.6%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.63 57.0 4.99e-01 100.0% 90.9%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 36.0 3.23e-01 84.3% 40.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 39.0 4.39e-01 100.0% 86.6%
1vu2300 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 54.0 4.79e-01 98.9% 69.3%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 44.0 4.47e-01 97.8% 80.2%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 4.26e-01 100.0% 86.6%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 4.22e-01 98.9% 84.8%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.77e-01 100.0% 82.0%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.58 45.0 4.38e-01 84.3% 100.0%
4r2xD00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 35.0 2.52e-01 84.3% 20.9%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 44.0 3.81e-01 80.9% 95.7%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 4.95e-01 96.6% 86.9%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.79e-01 96.6% 88.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.40e-01 98.9% 71.1%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 4.25e-01 97.8% 73.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.57 48.0 4.60e-01 94.4% 81.1%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 35.0 3.23e-01 84.3% 46.2%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.59e-01 97.8% 75.7%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.50e-01 97.8% 84.2%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 36.0 3.20e-01 84.3% 46.1%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.42e-01 97.8% 86.1%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.62e-01 97.8% 87.4%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.80e-01 79.8% 85.5%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 39.0 4.20e-01 96.6% 89.5%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 41.0 2.85e-01 84.3% 85.4%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 46.0 4.20e-01 100.0% 75.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 4.07e-01 79.8% 95.4%
1uz5A01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.53 40.0 3.31e-01 82.0% 78.8%
4az3B00 3.40.50.12670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 36.0 3.02e-01 83.1% 41.3%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 34.0 3.14e-01 86.5% 49.6%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.28e-01 84.3% 51.9%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.48e-01 83.1% 19.5%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 40.0 2.78e-01 88.8% 96.2%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 37.0 2.45e-01 77.5% 28.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252105 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 54.0 5.02e-01 96.6% 67.3%
3899369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 56.0 4.64e-01 98.9% 52.0%
3531579 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 56.0 4.61e-01 97.8% 51.0%
3742330 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 56.0 5.14e-01 97.8% 69.6%
3699518 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 55.0 4.87e-01 98.9% 62.4%
3591463 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 54.0 4.95e-01 96.6% 67.0%
3736955 3497.1.1.0 beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain 0.67 57.0 5.10e-01 94.4% 80.8%
2712015 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.66 51.0 5.34e-01 97.8% 90.1%
3422262 3497.1.1.1 beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › DNMT1-RFD 0.66 55.0 5.13e-01 94.4% 83.5%
3253063 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 56.0 5.12e-01 97.8% 71.3%
4988664 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 4.79e-01 89.9% 84.0%
3743938 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.97e-01 98.9% 65.4%
3171728 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 57.0 4.86e-01 97.8% 70.3%
3249490 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 52.0 4.79e-01 96.6% 67.8%
3743110 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 52.0 4.94e-01 98.9% 74.3%
185217 3497.1.1.1 beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › DNMT1-RFD 0.64 53.0 4.69e-01 92.1% 66.7%
1177137 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.64 50.0 4.86e-01 97.8% 75.0%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 53.0 4.78e-01 98.9% 66.7%
3390566 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 37.0 3.60e-01 85.4% 52.0%
3785371 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 57.0 4.91e-01 97.8% 69.6%
3478713 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 54.0 4.86e-01 100.0% 68.3%
3889621 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 39.0 4.58e-01 100.0% 91.7%
3511439 220.1.1.193 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_UBFD1_C 0.63 52.0 4.78e-01 97.8% 69.9%
3255173 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.63 53.0 4.88e-01 98.9% 71.3%
3627615 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.63 52.0 4.41e-01 98.9% 55.2%
4943079 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.39e-01 98.9% 52.9%
3411942 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.62 53.0 4.64e-01 98.9% 63.1%
4241432 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 54.0 4.85e-01 98.9% 68.0%
3191989 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 55.0 4.69e-01 97.8% 67.6%
4000862 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.62 55.0 4.80e-01 97.8% 76.3%
4158830 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.62 50.0 4.45e-01 88.8% 85.4%
4962459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 5.40e-01 96.6% 95.5%
3263647 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.89e-01 97.8% 78.3%
3931466 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.60 54.0 4.64e-01 97.8% 74.8%
5081087 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 5.01e-01 97.8% 86.4%
3679884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 4.87e-01 100.0% 91.7%
4344687 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.59 50.0 4.76e-01 98.9% 78.1%
3931704 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.59 53.0 4.93e-01 98.9% 84.5%
3562842 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 4.49e-01 97.8% 67.5%
3721289 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 38.0 4.12e-01 89.9% 81.4%
3704939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 4.70e-01 89.9% 84.4%
3301125 220.1.1.21 beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.59 51.0 4.55e-01 94.4% 71.2%
3798374 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 37.0 3.02e-01 80.9% 36.1%
5026543 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 40.0 3.32e-01 83.1% 41.3%
3259097 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 52.0 4.70e-01 100.0% 73.6%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 5.01e-01 100.0% 88.0%
3237220 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.58 51.0 4.72e-01 97.8% 82.6%
4137634 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.79e-01 94.4% 91.6%
3278616 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.46e-01 97.8% 92.0%
3273132 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 36.0 2.87e-01 85.4% 30.3%
3890418 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.57 50.0 4.80e-01 98.9% 84.8%
3626366 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.83e-01 100.0% 90.9%
5035653 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.57 31.0 3.79e-01 89.9% 81.7%
5081487 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.57 40.0 2.83e-01 85.4% 23.8%
3209694 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 38.0 3.72e-01 88.8% 62.0%
3939988 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 51.0 4.52e-01 98.9% 80.8%
3998850 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 51.0 4.74e-01 100.0% 91.8%
3276465 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.55 41.0 3.12e-01 82.0% 33.7%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 4.14e-01 100.0% 68.4%
3625334 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 4.07e-01 100.0% 65.0%
3425162 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 38.0 3.60e-01 82.0% 61.0%
3713222 220.1.1.263 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.54 47.0 4.40e-01 96.6% 78.2%
3616729 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 42.0 3.99e-01 98.9% 71.2%
4928517 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.00e-01 93.3% 72.7%
5057036 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 36.0 3.04e-01 83.1% 41.3%
3972955 4263.2.1.2 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › DUF6482 0.53 39.0 4.27e-01 95.5% 98.6%
4648652 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.51 36.0 3.46e-01 74.2% 92.4%
3435721 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 35.0 3.51e-01 77.5% 67.4%
5044455 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 39.0 3.17e-01 82.0% 71.2%
3983052 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.50 37.0 2.70e-01 77.5% 59.2%
D2 high residues 110-199
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26092.1 best T4_Y16D 76.6 2.00e-21 96.7% 97.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ub1A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.56 34.0 3.11e-01 93.3% 44.0%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.78e-01 94.4% 68.0%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 28.0 2.70e-01 94.4% 41.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480592 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.56 34.0 3.97e-01 93.3% 90.0%
5077150 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 3.21e-01 91.1% 55.8%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.53 34.0 3.79e-01 93.3% 89.2%
3310614 2008.1.1.146 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.50 37.0 2.56e-01 77.8% 75.8%