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OR413575.1__WNT47246.1__SPLA10_PHROGS00185__00185

Bact-Vir

OR413575.1__WNT47246.1__SPLA10_PHROGS00185__00185

Identity

Accession:
OR413575 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SPLA10

TaxID: 3077593

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 45.0 4.03e-01 70.2% 61.2%
3203036 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 42.0 3.99e-01 70.2% 81.7%
3999078 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.63 39.0 4.44e-01 77.2% 100.0%
3176727 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 45.0 3.93e-01 86.0% 90.0%
3393739 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.57 39.0 4.12e-01 82.5% 91.1%
5001306 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.51 40.0 3.10e-01 93.0% 57.9%
D2 medium residues 79-124
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.75 58.0 4.15e-01 95.7% 28.9%
5d1kB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 64.0 5.41e-01 100.0% 62.3%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.72 47.0 5.23e-01 71.7% 91.2%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 50.0 4.29e-01 84.8% 52.1%
3vd6C01 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.64 47.0 4.88e-01 82.6% 87.8%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 41.0 4.02e-01 71.7% 69.2%
2cshA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 42.0 3.35e-01 95.7% 38.9%
1q7lA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 47.0 3.17e-01 97.8% 56.8%
2miqA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 41.0 3.33e-01 89.1% 40.4%
1g2dC03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 33.0 3.40e-01 73.9% 92.6%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.53 38.0 3.44e-01 82.6% 85.7%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 45.0 3.15e-01 97.8% 37.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3844449 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.81 44.0 3.48e-01 80.4% 29.4%
3268530 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 62.0 6.62e-01 91.3% 100.0%
3494950 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 69.0 5.68e-01 100.0% 57.5%
3539687 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.76 70.0 5.57e-01 100.0% 94.1%
3507545 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 66.0 5.59e-01 100.0% 61.3%
4000128 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 66.0 5.35e-01 100.0% 95.3%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.74 67.0 5.37e-01 100.0% 92.9%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.73 66.0 5.21e-01 100.0% 94.4%
3607247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 51.0 5.66e-01 76.1% 97.1%
3735240 376.1.1.114 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.73 59.0 5.41e-01 97.8% 68.3%
3395505 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.73 54.0 5.51e-01 82.6% 82.2%
3260080 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 64.0 5.20e-01 95.7% 100.0%
3343337 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 64.0 5.19e-01 100.0% 95.3%
3435304 376.1.1.52 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.71 57.0 5.03e-01 91.3% 61.5%
3399231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 62.0 5.29e-01 100.0% 62.7%
3233807 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 4.71e-01 84.8% 57.1%
4442858 931.1.1.15 ↗ few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 0.70 46.0 5.08e-01 73.9% 91.4%
4028097 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 53.0 4.61e-01 82.6% 55.9%
3894502 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 52.0 4.91e-01 82.6% 69.1%
3503755 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 55.0 5.14e-01 93.5% 71.2%
3606405 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 52.0 4.41e-01 84.8% 56.0%
3206375 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 56.0 5.27e-01 93.5% 80.0%
3201162 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.65 51.0 4.34e-01 91.3% 53.3%
3572526 386.1.1.377 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF4662 0.64 43.0 4.04e-01 91.3% 58.2%
3671431 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.64 49.0 5.00e-01 91.3% 88.9%
3410008 376.1.1.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like 0.63 46.0 4.56e-01 84.8% 74.0%
3264608 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 46.0 4.10e-01 82.6% 54.3%
3177802 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 48.0 4.60e-01 87.0% 72.7%
3851875 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 50.0 4.92e-01 93.5% 100.0%
3914063 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.60 46.0 4.45e-01 91.3% 73.6%
3714085 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.57 39.0 4.11e-01 82.6% 87.5%
3268166 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 39.0 3.83e-01 78.3% 68.0%
3473268 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 34.0 3.78e-01 73.9% 89.7%
4314985 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.54 40.0 4.14e-01 91.3% 90.7%
3864707 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.54 34.0 3.54e-01 80.4% 70.0%
3264583 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 36.0 3.89e-01 73.9% 100.0%
3541609 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.53 38.0 3.94e-01 82.6% 100.0%
3472591 109.4.1.1578 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30504 0.53 47.0 2.79e-01 100.0% 34.6%
3211955 101.1.1.246 ↗ alpha arrays › HTH › HTH › Three-helical HTH › zf-C2H2 0.52 33.0 3.40e-01 78.3% 93.3%