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OR413580.1__WNT47779.1__SPLA2_PHROGS00045__00045

Bact-Vir

OR413580.1__WNT47779.1__SPLA2_PHROGS00045__00045

Identity

Accession:
OR413580 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-92
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 59.0 5.21e-01 85.7% 87.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 52.0 5.08e-01 95.7% 71.8%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.70 47.0 4.23e-01 70.0% 54.6%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.69 47.0 4.96e-01 71.4% 82.5%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.29e-01 97.1% 98.1%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 43.0 4.88e-01 70.0% 90.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 5.08e-01 88.6% 100.0%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 58.0 4.73e-01 100.0% 84.2%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.65 37.0 4.34e-01 75.7% 86.7%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.64 47.0 4.17e-01 100.0% 52.3%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.86e-01 91.4% 92.7%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 52.0 3.91e-01 100.0% 36.2%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.64 51.0 4.78e-01 88.6% 87.5%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 53.0 5.32e-01 100.0% 90.3%
1fshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 3.90e-01 71.4% 74.5%
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.61 47.0 3.97e-01 94.3% 48.0%
4qclA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.61 44.0 3.38e-01 77.1% 88.7%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 46.0 3.36e-01 95.7% 28.6%
4gbjC02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 52.0 4.19e-01 95.7% 85.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 45.0 4.59e-01 82.9% 85.1%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 3.32e-01 84.3% 36.1%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.59 40.0 3.62e-01 70.0% 99.0%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 39.0 3.10e-01 70.0% 93.5%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 32.0 3.39e-01 85.7% 56.2%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.58 43.0 3.36e-01 80.0% 88.5%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 35.0 3.55e-01 75.7% 60.3%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 49.0 4.12e-01 97.1% 92.7%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 41.0 4.02e-01 75.7% 75.6%
5fbhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 3.18e-01 92.9% 78.9%
1yb0B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.57 51.0 3.89e-01 100.0% 79.2%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 46.0 3.65e-01 92.9% 81.8%
3shgA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.56 47.0 3.45e-01 100.0% 33.3%
1dxlA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 41.0 3.48e-01 81.4% 87.6%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 44.0 3.74e-01 91.4% 88.3%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 34.0 3.67e-01 95.7% 80.0%
2bh7A02 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.53 44.0 3.53e-01 95.7% 89.5%
3k59A07 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.53 42.0 3.45e-01 90.0% 89.4%
3g7sA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.76e-01 95.7% 46.4%
4e4yA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 2.66e-01 78.6% 83.9%
3nnqA00 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.52 45.0 4.10e-01 100.0% 89.5%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.56e-01 85.7% 76.7%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 44.0 3.95e-01 97.1% 97.0%
3hklA00 1.10.2000.10 Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain 0.51 41.0 3.38e-01 91.4% 94.3%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 36.0 2.79e-01 74.3% 97.0%
2isnB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.68e-01 92.9% 87.2%
4v1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 43.0 2.82e-01 100.0% 38.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013347 101.1.2.946 alpha arrays › HTH › HTH › winged helix domain › PF26555 0.86 54.0 6.51e-01 71.4% 100.0%
4995688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 55.0 6.08e-01 91.4% 89.1%
4949368 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 54.0 5.93e-01 91.4% 87.3%
4200176 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.80 54.0 3.30e-01 98.6% 12.4%
3293154 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.79 56.0 5.93e-01 94.3% 86.7%
3829115 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.78 54.0 5.56e-01 94.3% 76.9%
4112388 101.35.1.19 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 0.78 58.0 5.14e-01 97.1% 55.0%
4996152 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 58.0 5.31e-01 98.6% 61.1%
3312794 101.1.3.22 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.78 54.0 5.31e-01 94.3% 68.0%
5003561 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.77 48.0 5.70e-01 87.1% 97.8%
3454275 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.77 50.0 5.74e-01 92.9% 94.0%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 56.0 4.80e-01 100.0% 50.0%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.76 60.0 5.87e-01 85.7% 77.3%
3334461 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 53.0 5.26e-01 95.7% 69.3%
3579029 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 46.0 4.48e-01 88.6% 56.4%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.74 56.0 5.78e-01 100.0% 87.7%
5052346 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.71e-01 100.0% 90.0%
4224167 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.74 51.0 5.47e-01 94.3% 85.0%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 58.0 5.86e-01 97.1% 87.1%
4586835 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.72 52.0 5.39e-01 94.3% 81.5%
3478184 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 50.0 4.41e-01 94.3% 50.0%
4213222 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 53.0 5.49e-01 94.3% 84.4%
3955500 101.1.2.655 alpha arrays › HTH › HTH › winged helix domain › DUF732 0.71 58.0 5.65e-01 88.6% 89.7%
3200990 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 4.54e-01 90.0% 70.7%
4969467 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 4.97e-01 87.1% 64.8%
3954237 532.2.1.16 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.71 56.0 5.42e-01 87.1% 88.7%
5001590 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 51.0 5.56e-01 91.4% 98.2%
3489070 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.69 53.0 5.48e-01 84.3% 93.8%
2478 101.1.1.15 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Mu_1 0.69 51.0 4.59e-01 95.7% 56.6%
4165809 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.69 50.0 4.76e-01 100.0% 64.7%
3665049 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.68 51.0 4.64e-01 91.4% 58.9%
3694221 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.68 51.0 5.48e-01 94.3% 93.3%
5004578 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.68 53.0 5.70e-01 98.6% 98.3%
4985930 7534.1.1.1 a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.67 61.0 3.90e-01 97.1% 26.8%
5021144 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.67 47.0 5.24e-01 90.0% 94.5%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 50.0 4.61e-01 100.0% 62.2%
4554621 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.66 54.0 5.00e-01 92.9% 70.8%
3412630 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.66 58.0 4.66e-01 98.6% 78.5%
3988890 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 40.0 4.66e-01 82.9% 95.6%
4984715 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.66 57.0 4.09e-01 100.0% 94.8%
4938693 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.65 55.0 5.20e-01 92.9% 77.6%
3787963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.63e-01 98.6% 78.5%
3277622 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 57.0 3.58e-01 100.0% 58.5%
5021717 101.1.1.562 alpha arrays › HTH › HTH › Three-helical HTH › PF28505 0.64 46.0 3.77e-01 90.0% 40.8%
3591354 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.63 35.0 3.94e-01 77.1% 69.1%
3268942 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.62 48.0 3.79e-01 84.3% 41.3%
4281782 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 47.0 4.68e-01 84.3% 90.7%
3986130 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.61 52.0 3.35e-01 100.0% 21.3%
3708606 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.15e-01 95.7% 44.9%
3701864 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.58 48.0 3.18e-01 91.4% 44.6%
5010816 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.57 47.0 4.00e-01 92.9% 79.2%
3518787 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.54 42.0 4.37e-01 85.7% 100.0%
3589184 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 45.0 4.42e-01 94.3% 94.7%
3392425 109.4.1.235 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.51 43.0 3.07e-01 100.0% 52.8%
4642402 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.50 41.0 2.40e-01 94.3% 52.0%