Back to structures

OR413583.1__WNT48229.1__SPLA5a_PHROGS00146__00121

Bact-Vir

OR413583.1__WNT48229.1__SPLA5a_PHROGS00146__00121

Identity

Accession:
OR413583 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06919.19 best Phage_T4_Gp30_7 60.2 2.20e-16 100.0% 47.5%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 50.0 3.15e-01 85.0% 75.9%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.78e-01 80.0% 84.8%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 47.0 3.59e-01 88.3% 61.8%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 48.0 3.65e-01 90.0% 65.2%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 48.0 3.60e-01 90.0% 65.5%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 44.0 3.50e-01 95.0% 42.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.15e-01 88.3% 84.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 49.0 4.31e-01 100.0% 92.1%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 47.0 3.86e-01 100.0% 77.1%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 44.0 3.46e-01 90.0% 61.9%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 42.0 3.48e-01 83.3% 91.4%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.04e-01 83.3% 32.5%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.23e-01 88.3% 42.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.67e-01 83.3% 74.1%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 45.0 2.89e-01 100.0% 87.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.25e-01 100.0% 33.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.58e-01 81.7% 78.2%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.51 37.0 3.94e-01 95.0% 94.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4293623 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 52.0 3.06e-01 81.7% 61.2%
4403908 4.1.1.291 beta barrels › SH3 › SH3 › SH3 › YNQ4_N 0.64 45.0 4.96e-01 80.0% 97.8%
4302400 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.64 43.0 2.53e-01 70.0% 27.2%
3272167 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 43.0 2.78e-01 73.3% 51.2%
3266967 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.60 46.0 2.76e-01 83.3% 91.3%
3242587 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 50.0 4.38e-01 95.0% 82.1%
3694130 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.60 37.0 3.90e-01 93.3% 67.3%
3177333 59.1.2.0 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C 0.59 46.0 4.43e-01 88.3% 100.0%
3193427 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 42.0 2.91e-01 78.3% 56.8%
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 44.0 3.58e-01 86.7% 94.2%
3810217 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.17e-01 100.0% 86.0%
3243250 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.56 48.0 4.32e-01 100.0% 68.2%
3399614 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.55 45.0 3.38e-01 90.0% 62.7%
4995209 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.55 42.0 3.13e-01 100.0% 32.3%
3915512 3735.1.1.14 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.54 43.0 2.39e-01 90.0% 29.2%
3283507 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.53 46.0 4.05e-01 100.0% 90.0%
3300506 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.51 44.0 3.43e-01 100.0% 74.3%
D2 medium residues 61-120
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06919.19 best Phage_T4_Gp30_7 74.1 1.10e-20 100.0% 50.0%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.68 48.0 4.62e-01 75.0% 95.6%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.63 52.0 3.98e-01 96.7% 57.1%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.49e-01 100.0% 55.7%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.61 48.0 3.14e-01 90.0% 23.7%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 40.0 3.09e-01 70.0% 91.7%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.84e-01 100.0% 64.5%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.58 36.0 2.61e-01 76.7% 20.5%
3n2oA04 1.10.287.3440 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 38.0 4.06e-01 100.0% 82.7%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 45.0 3.61e-01 100.0% 97.2%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.56 45.0 3.42e-01 100.0% 55.7%
5d8nA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.55 46.0 3.39e-01 100.0% 77.7%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.55 45.0 3.06e-01 95.0% 60.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.54 33.0 3.43e-01 85.0% 65.5%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 39.0 2.93e-01 83.3% 88.0%
3we0A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.54 42.0 3.30e-01 88.3% 67.9%
1w6kA01 6.20.120.20 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 29.0 3.12e-01 98.3% 52.0%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.53 44.0 2.64e-01 98.3% 22.1%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.30e-01 100.0% 68.2%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 40.0 3.08e-01 86.7% 45.2%
8dvhB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 41.0 3.05e-01 91.7% 36.9%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 44.0 3.93e-01 100.0% 92.1%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.03e-01 100.0% 41.3%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.51 42.0 3.82e-01 96.7% 84.9%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 41.0 2.69e-01 100.0% 85.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020780 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.74 50.0 3.97e-01 70.0% 41.7%
4995140 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.65 54.0 4.12e-01 93.3% 91.0%
3920672 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 37.0 3.21e-01 98.3% 42.2%
None 0.55 46.0 3.65e-01 98.3% 85.5%
3443843 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 47.0 2.74e-01 100.0% 60.0%
3677917 109.3.1.320 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase 0.55 45.0 3.61e-01 96.7% 91.1%
3446121 109.4.1.3478 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.55 46.0 2.66e-01 98.3% 18.3%
3420651 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.55 46.0 2.94e-01 98.3% 36.8%
3354291 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 44.0 2.92e-01 96.7% 39.8%
3370073 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 46.0 2.84e-01 98.3% 91.5%
5024540 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.55 44.0 3.48e-01 96.7% 55.2%
3299472 109.4.1.2982 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, PPR_long, Eplus_motif, E_motif 0.55 45.0 2.81e-01 98.3% 29.1%
None 0.55 45.0 3.60e-01 98.3% 88.9%
3355254 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 45.0 2.63e-01 98.3% 18.7%
3444049 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.55 46.0 2.72e-01 100.0% 63.3%
3807308 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 45.0 2.60e-01 98.3% 17.4%
3383616 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.54 45.0 2.61e-01 98.3% 18.4%
3823029 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 44.0 2.57e-01 98.3% 17.2%
3349809 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 45.0 2.68e-01 98.3% 22.0%
3676373 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.54 44.0 2.63e-01 98.3% 20.7%
3442726 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 44.0 2.55e-01 98.3% 16.2%
3821185 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.54 44.0 2.60e-01 98.3% 18.0%
3320698 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 44.0 2.59e-01 98.3% 18.6%
3419226 109.4.1.3173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.54 44.0 2.83e-01 98.3% 34.2%
3346510 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.54 44.0 2.60e-01 98.3% 20.0%
4933961 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 39.0 2.44e-01 80.0% 20.3%
3684103 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 43.0 2.57e-01 96.7% 19.8%
3375945 109.4.1.619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.53 44.0 3.67e-01 96.7% 89.6%
3351960 109.4.1.2979 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.53 43.0 2.56e-01 98.3% 56.4%
3789193 109.4.1.560 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 0.53 38.0 2.26e-01 80.0% 19.2%
3452954 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.53 43.0 2.53e-01 96.7% 19.7%
3589711 3227.1.1.1 alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.53 40.0 2.55e-01 83.3% 87.4%
4025195 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.52 38.0 2.92e-01 83.3% 64.8%
3280234 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 40.0 2.69e-01 91.7% 28.7%
2033701 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 40.0 2.71e-01 88.3% 40.2%