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OR413585.1__WNT48597.1__SPLA5c_PHROGS00105__00104

Bact-Vir

OR413585.1__WNT48597.1__SPLA5c_PHROGS00105__00104

Identity

Accession:
OR413585 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Seoulvirus› Salmonella_phage_SPLA5c

TaxID: 3077603

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.54 30.0 3.12e-01 89.7% 55.9%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.38e-01 78.4% 61.3%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 22.0 3.02e-01 73.2% 82.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 28.0 3.33e-01 74.2% 76.2%
D2 high residues 108-193
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fa1A00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.66 48.0 3.96e-01 77.9% 85.5%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.61 40.0 4.59e-01 97.7% 98.3%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 43.0 3.80e-01 82.6% 99.2%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 41.0 2.56e-01 81.4% 16.4%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.82e-01 94.2% 70.4%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.95e-01 91.9% 75.4%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 36.0 2.55e-01 100.0% 21.2%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.51 39.0 3.29e-01 88.4% 47.1%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 43.0 3.57e-01 91.9% 84.6%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 45.0 3.64e-01 100.0% 58.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 41.0 3.81e-01 81.4% 55.5%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 35.0 4.00e-01 80.2% 86.7%
5000011 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.55 41.0 3.86e-01 80.2% 100.0%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.00e-01 100.0% 72.0%
3719596 77.1.1.3 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.54 47.0 3.79e-01 97.7% 62.9%
4944259 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 42.0 3.07e-01 86.0% 66.4%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 39.0 3.79e-01 81.4% 72.6%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.51 34.0 3.89e-01 76.7% 98.3%
5049605 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 30.0 3.53e-01 79.1% 90.9%
4943224 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.39e-01 91.9% 75.3%