←Back to structures
OR413585.1__WNT48610.1__SPLA5c_PHROGS00118__00117
Bact-VirOR413585.1__WNT48610.1__SPLA5c_PHROGS00118__00117
Identity
- Accession:
- OR413585 ↗
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Taxonomy
TaxID: 3077603
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 91-152
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wdhA02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.71 | 49.0 | 4.09e-01 | 71.0% | 66.7% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.70 | 49.0 | 3.82e-01 | 72.6% | 89.5% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.67 | 51.0 | 3.61e-01 | 82.3% | 31.9% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.66 | 50.0 | 4.46e-01 | 87.1% | 57.5% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 42.0 | 4.00e-01 | 85.5% | 53.2% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 50.0 | 3.94e-01 | 80.6% | 41.3% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 53.0 | 5.05e-01 | 87.1% | 100.0% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 45.0 | 4.53e-01 | 80.6% | 71.9% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 41.0 | 3.85e-01 | 82.3% | 53.2% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 43.0 | 4.25e-01 | 82.3% | 66.7% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 50.0 | 4.59e-01 | 95.2% | 67.1% |
| 2h5gB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 53.0 | 3.51e-01 | 100.0% | 55.2% |
| 6lo8F01 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.61 | 53.0 | 5.15e-01 | 98.4% | 89.9% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 46.0 | 4.44e-01 | 93.5% | 71.8% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.61 | 44.0 | 3.49e-01 | 75.8% | 82.9% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.61 | 48.0 | 4.77e-01 | 88.7% | 83.1% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 3.47e-01 | 80.6% | 40.9% |
| 4mycA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.60 | 49.0 | 3.10e-01 | 90.3% | 90.2% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.60 | 49.0 | 3.98e-01 | 88.7% | 48.2% |
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.60 | 45.0 | 3.43e-01 | 82.3% | 62.3% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 50.0 | 4.02e-01 | 100.0% | 79.9% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.58 | 52.0 | 4.48e-01 | 100.0% | 65.6% |
| 1jb0F00 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.58 | 49.0 | 3.77e-01 | 98.4% | 41.1% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 42.0 | 3.78e-01 | 80.6% | 56.3% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 41.0 | 2.82e-01 | 82.3% | 94.2% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.77e-01 | 82.3% | 21.0% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.12e-01 | 93.5% | 27.6% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 2.93e-01 | 83.9% | 70.3% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 42.0 | 3.23e-01 | 90.3% | 34.6% |
| 2wvnA01 | 1.20.120.1020 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Prion-inhibition and propagation, HeLo domain | 0.53 | 46.0 | 3.21e-01 | 100.0% | 49.8% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.52 | 38.0 | 3.84e-01 | 82.3% | 76.6% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.38e-01 | 87.1% | 53.8% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.52 | 45.0 | 3.65e-01 | 95.2% | 70.2% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 42.0 | 3.46e-01 | 98.4% | 52.0% |
| 2kq9A00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.51 | 45.0 | 3.72e-01 | 100.0% | 90.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3304227 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.73 | 56.0 | 5.19e-01 | 96.8% | 65.0% |
| 3784740 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.73 | 48.0 | 4.50e-01 | 82.3% | 56.0% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.71 | 54.0 | 4.45e-01 | 100.0% | 45.2% |
| 3325763 | 5051.1.1.12 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Trp_Tyr_perm | 0.69 | 62.0 | 3.75e-01 | 100.0% | 52.4% |
| 3582028 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.65 | 57.0 | 4.89e-01 | 98.4% | 65.0% |
| 3940232 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 47.0 | 4.01e-01 | 80.6% | 46.7% |
| 4026896 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.65 | 55.0 | 4.21e-01 | 100.0% | 41.9% |
| 3693675 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 42.0 | 3.24e-01 | 80.6% | 30.4% |
| 4085341 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.63 | 47.0 | 4.11e-01 | 88.7% | 52.6% |
| 3614037 | 633.23.1.11 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA | 0.62 | 49.0 | 3.52e-01 | 90.3% | 62.5% |
| 3910677 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.61 | 44.0 | 2.72e-01 | 75.8% | 28.7% |
| 5055292 | 5041.1.1.54 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › FtsX | 0.61 | 52.0 | 4.52e-01 | 95.2% | 83.2% |
| 3814012 | 601.7.1.66 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › CPP1-like | 0.60 | 51.0 | 4.32e-01 | 100.0% | 55.6% |
| 3220241 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 51.0 | 3.11e-01 | 96.8% | 15.4% |
| 1068675 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.59 | 51.0 | 3.77e-01 | 100.0% | 59.5% |
| 3712650 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 45.0 | 3.70e-01 | 82.3% | 45.5% |
| 3611383 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.59 | 48.0 | 3.91e-01 | 87.1% | 53.6% |
| 3827877 | 150.5.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF3082 | 0.59 | 43.0 | 4.10e-01 | 79.0% | 66.7% |
| 3321831 | 192.29.1.115 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF599 | 0.59 | 49.0 | 3.48e-01 | 98.4% | 92.6% |
| 4943798 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 45.0 | 3.05e-01 | 82.3% | 36.4% |
| 3270180 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.58 | 46.0 | 4.12e-01 | 90.3% | 65.6% |
| 4534734 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.57 | 50.0 | 4.01e-01 | 100.0% | 96.0% |
| 3734442 | 192.8.1.35 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 | 0.56 | 43.0 | 3.43e-01 | 87.1% | 40.0% |
| 3553833 | 5086.1.1.102 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp | 0.56 | 47.0 | 3.38e-01 | 95.2% | 75.3% |
| 3934153 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 43.0 | 3.78e-01 | 85.5% | 55.8% |
| 3194354 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.55 | 42.0 | 3.48e-01 | 85.5% | 46.1% |
| 3387205 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.54 | 45.0 | 3.97e-01 | 100.0% | 62.2% |
| 3692753 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.54 | 47.0 | 3.46e-01 | 93.5% | 58.0% |
| 3598050 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.54 | 41.0 | 3.79e-01 | 82.3% | 63.7% |
| 4951651 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.53 | 43.0 | 4.21e-01 | 88.7% | 79.4% |
| 222991 | 192.10.1.1 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N | 0.53 | 46.0 | 4.01e-01 | 95.2% | 69.6% |
| 4493716 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.53 | 40.0 | 2.89e-01 | 83.9% | 39.5% |
| 4998773 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.52 | 46.0 | 3.25e-01 | 100.0% | 89.7% |
| 3719896 | 3755.2.1.0 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein | 0.51 | 43.0 | 3.71e-01 | 98.4% | 60.0% |
| 3630322 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 48.0 | 2.73e-01 | 100.0% | 20.6% |
| 3233589 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 44.0 | 4.13e-01 | 98.4% | 82.7% |
D2
medium
residues 9-79
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 57.0 | 3.61e-01 | 95.8% | 29.3% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.57 | 41.0 | 3.06e-01 | 74.6% | 44.3% |
| 2o2kA02 | 1.10.288.10 | Mainly Alpha › Orthogonal Bundle › Cobalamin-dependent Methionine Synthase; domain 2 › Cobalamin-dependent Methionine Synthase, domain 2 | 0.56 | 41.0 | 3.81e-01 | 77.5% | 67.4% |
| 4c0kA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 38.0 | 3.42e-01 | 74.6% | 55.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3405944 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.75 | 53.0 | 5.29e-01 | 76.1% | 77.3% |
| 3081263 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.64 | 46.0 | 4.79e-01 | 76.1% | 85.7% |
| 3369798 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.63 | 52.0 | 4.88e-01 | 100.0% | 74.1% |
| 3689474 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.55 | 46.0 | 4.11e-01 | 93.0% | 67.0% |