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OR413585.1__WNT48648.1__SPLA5c_PHROGS00156__00155

Bact-Vir

OR413585.1__WNT48648.1__SPLA5c_PHROGS00156__00155

Identity

Accession:
OR413585 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Seoulvirus› Salmonella_phage_SPLA5c

TaxID: 3077603

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: rep: NC_042081.1__YP_009619559.1__FDJ06_gp019__00019__D2-77
D2 medium residues 91-153
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 41.0 3.48e-01 95.2% 36.5%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 39.0 4.08e-01 88.9% 64.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 34.0 3.62e-01 79.4% 53.6%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.63 33.0 3.35e-01 90.5% 49.2%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.61 34.0 3.00e-01 85.7% 33.3%
4nurA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 33.0 2.67e-01 84.1% 26.7%
2oggA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.57 44.0 3.52e-01 87.3% 41.0%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 36.0 3.04e-01 87.3% 38.3%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 39.0 3.35e-01 92.1% 46.5%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 31.0 3.10e-01 87.3% 46.4%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 44.0 2.88e-01 93.7% 89.2%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.54 42.0 3.80e-01 88.9% 78.3%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.54 34.0 2.81e-01 90.5% 33.3%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 2.94e-01 90.5% 27.3%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 39.0 3.17e-01 85.7% 91.4%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 35.0 2.77e-01 71.4% 46.5%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 31.0 3.28e-01 88.9% 65.5%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.00e-01 88.9% 84.2%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 33.0 3.03e-01 92.1% 44.6%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.50 41.0 3.24e-01 96.8% 73.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.50 33.0 3.51e-01 74.6% 78.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4429847 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.62 42.0 3.17e-01 98.4% 27.3%
3970718 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.62 42.0 3.24e-01 98.4% 30.0%
3271234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 3.92e-01 88.9% 84.4%
3229376 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.33e-01 77.8% 41.8%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 34.0 3.28e-01 92.1% 51.4%
5029496 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 43.0 3.42e-01 90.5% 41.1%
4963795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.33e-01 92.1% 85.3%
2905 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.54 42.0 3.80e-01 88.9% 78.3%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.54 33.0 3.31e-01 90.5% 58.5%
4027702 6127.1.1.1 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma 0.53 43.0 4.16e-01 88.9% 87.1%
4418858 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 38.0 3.28e-01 82.5% 57.4%
3808103 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 37.0 3.14e-01 77.8% 68.7%
3715939 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 40.0 2.93e-01 90.5% 77.1%
3376848 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.51 32.0 3.19e-01 92.1% 57.1%