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OR413585.1__WNT48738.1__SPLA5c_PHROGS00246__00245

Bact-Vir

OR413585.1__WNT48738.1__SPLA5c_PHROGS00246__00245

Identity

Accession:
OR413585 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Seoulvirus› Salmonella_phage_SPLA5c

TaxID: 3077603

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-87
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.61 33.0 3.77e-01 75.3% 70.7%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.61 44.0 3.28e-01 77.8% 47.9%
2qbyB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 38.0 3.54e-01 100.0% 52.0%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 35.0 4.03e-01 98.8% 100.0%
3hx4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 49.0 3.67e-01 100.0% 49.8%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 40.0 3.75e-01 100.0% 63.4%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 38.0 3.95e-01 75.3% 100.0%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 36.0 3.71e-01 74.1% 74.7%
4m8mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.81e-01 90.1% 73.1%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 39.0 3.87e-01 98.8% 75.9%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.90e-01 96.3% 75.6%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 35.0 3.41e-01 87.7% 61.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 40.0 2.73e-01 87.7% 78.2%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 35.0 2.58e-01 72.8% 66.8%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 37.0 3.89e-01 79.0% 94.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049514 148.1.3.50 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.66 34.0 3.43e-01 79.0% 47.1%
4965582 4953.2.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain 0.58 41.0 4.03e-01 75.3% 72.2%
3227634 101.38.1.1 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › C_tripleX 0.58 40.0 4.34e-01 97.5% 89.2%
3166992 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.57 38.0 4.01e-01 72.8% 76.0%
3696367 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 4.07e-01 72.8% 80.0%
4088578 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.55 41.0 4.40e-01 96.3% 98.5%
4107264 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.92e-01 87.7% 71.3%
5077902 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.54 42.0 2.96e-01 97.5% 25.1%
3908024 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.54 39.0 3.91e-01 90.1% 75.3%
4775423 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 40.0 3.74e-01 88.9% 64.4%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.53 43.0 4.07e-01 96.3% 74.0%
3174480 101.1.2.527 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.52 43.0 3.98e-01 93.8% 81.8%
3716289 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.52 37.0 2.99e-01 74.1% 82.4%
4979955 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.52 35.0 2.57e-01 71.6% 33.3%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.52 36.0 3.71e-01 74.1% 78.7%
3468502 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.51 32.0 3.40e-01 80.2% 72.9%
4946290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.73e-01 92.6% 86.2%
4937522 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.51 36.0 3.26e-01 98.8% 50.4%
3488752 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.50 43.0 3.08e-01 100.0% 89.1%
D2 medium residues 100-130
PDB