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OR420737.1__WMM95040.1__CRP171_gp1__00001

Bact-Vir

OR420737.1__WMM95040.1__CRP171_gp1__00001

Identity

Accession:
OR420737 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Oceanidvirus› Roseobacter_phage_CRP-171

TaxID: 3072846

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.82 67.0 5.68e-01 91.7% 56.2%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.81 72.0 5.37e-01 100.0% 43.6%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.77 62.0 4.05e-01 87.5% 45.2%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 68.0 4.95e-01 100.0% 50.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 64.0 5.14e-01 97.9% 49.5%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.74 57.0 3.85e-01 85.4% 48.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 66.0 4.87e-01 100.0% 39.7%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 65.0 4.81e-01 100.0% 41.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 64.0 4.96e-01 100.0% 44.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.72 50.0 3.08e-01 72.9% 74.6%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 55.0 4.50e-01 85.4% 46.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 59.0 5.64e-01 97.9% 78.9%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.70 61.0 5.06e-01 100.0% 58.0%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.70 52.0 3.41e-01 85.4% 41.9%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 4.43e-01 93.8% 44.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.68 41.0 3.65e-01 70.8% 40.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.68 49.0 4.09e-01 81.2% 45.7%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.66 56.0 4.87e-01 97.9% 70.1%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 57.0 3.98e-01 100.0% 48.1%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 54.0 4.04e-01 97.9% 38.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.65 52.0 4.81e-01 100.0% 67.6%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.65 53.0 4.71e-01 97.9% 63.2%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.65 49.0 3.28e-01 87.5% 44.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 50.0 4.09e-01 89.6% 45.7%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.64 46.0 2.87e-01 77.1% 97.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.64 45.0 3.87e-01 75.0% 53.2%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 4.10e-01 85.4% 79.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 51.0 4.01e-01 97.9% 44.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 45.0 4.15e-01 77.1% 61.5%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.62 43.0 3.14e-01 77.1% 49.0%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 51.0 3.96e-01 97.9% 42.3%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 3.92e-01 85.4% 72.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 3.92e-01 75.0% 59.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 52.0 4.11e-01 100.0% 45.7%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.60 45.0 3.87e-01 81.2% 69.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 49.0 4.36e-01 89.6% 72.1%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 42.0 2.62e-01 75.0% 20.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 53.0 4.00e-01 100.0% 42.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 53.0 4.65e-01 100.0% 74.6%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 51.0 3.87e-01 95.8% 67.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 52.0 4.04e-01 100.0% 79.2%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 48.0 3.72e-01 95.8% 38.0%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 3.83e-01 91.7% 76.3%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.83e-01 100.0% 43.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.58 45.0 4.35e-01 87.5% 89.1%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 46.0 4.19e-01 100.0% 64.9%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 2.88e-01 91.7% 17.3%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 42.0 3.54e-01 75.0% 51.3%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 49.0 3.00e-01 93.8% 86.8%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 3.56e-01 100.0% 71.4%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.43e-01 83.3% 73.3%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 47.0 3.77e-01 93.8% 50.5%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.57 45.0 4.08e-01 91.7% 82.4%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.92e-01 100.0% 84.4%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 48.0 3.20e-01 95.8% 43.7%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 37.0 3.54e-01 77.1% 58.9%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 45.0 3.65e-01 100.0% 84.4%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.31e-01 85.4% 73.2%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 48.0 2.91e-01 97.9% 68.4%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.43e-01 97.9% 76.9%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.56 41.0 3.91e-01 83.3% 98.3%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 39.0 4.29e-01 83.3% 100.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 41.0 3.07e-01 91.7% 81.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 49.0 3.75e-01 100.0% 45.0%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.16e-01 97.9% 93.6%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 47.0 3.29e-01 100.0% 37.3%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.11e-01 81.2% 67.7%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.51 44.0 3.02e-01 97.9% 28.7%
1hfeL03 3.40.950.10 Alpha Beta › 3-Layer(aba) Sandwich › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 0.50 45.0 3.18e-01 100.0% 67.8%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4926994 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.83 43.0 3.19e-01 83.3% 24.0%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.81 56.0 5.03e-01 72.9% 98.5%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.81 68.0 6.99e-01 93.8% 97.8%
3792405 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.80 72.0 4.08e-01 100.0% 10.1%
4635248 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.79 52.0 3.04e-01 77.1% 8.8%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 72.0 4.97e-01 100.0% 35.2%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.78 59.0 4.67e-01 85.4% 40.0%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.75 60.0 5.77e-01 89.6% 96.4%
3965157 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.75 49.0 3.26e-01 77.1% 17.4%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 62.0 4.95e-01 100.0% 47.4%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 62.0 4.72e-01 95.8% 40.9%
3699899 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.73 62.0 4.74e-01 100.0% 41.7%
5025256 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.73 49.0 2.90e-01 70.8% 16.8%
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 62.0 5.42e-01 100.0% 66.7%
3229319 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 59.0 4.57e-01 97.9% 40.9%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.72 60.0 4.73e-01 93.8% 46.0%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 51.0 4.64e-01 77.1% 92.3%
4928056 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 53.0 5.23e-01 81.2% 84.0%
3178078 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.70 62.0 4.26e-01 100.0% 46.7%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 56.0 4.51e-01 93.8% 48.0%
3482807 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.69 50.0 3.82e-01 77.1% 75.9%
3638525 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 52.0 3.03e-01 81.2% 17.0%
4993366 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.69 48.0 3.47e-01 75.0% 79.3%
3217638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 54.0 4.72e-01 91.7% 57.3%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.68 56.0 4.06e-01 95.8% 35.2%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 54.0 4.65e-01 95.8% 56.0%
3251228 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 3.98e-01 100.0% 31.0%
4962459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 54.0 4.52e-01 91.7% 52.3%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.10e-01 89.6% 37.4%
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.67 51.0 3.25e-01 91.7% 16.1%
4027872 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 4.46e-01 100.0% 47.4%
5028042 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 52.0 3.86e-01 85.4% 55.0%
4961065 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.66 52.0 4.87e-01 89.6% 73.3%
4031789 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.66 52.0 4.84e-01 89.6% 70.0%
5045772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 3.98e-01 91.7% 37.4%
5001238 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.09e-01 97.9% 40.0%
5053650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 50.0 3.75e-01 85.4% 59.2%
4975535 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.65 48.0 4.17e-01 83.3% 52.5%
3925738 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 56.0 4.33e-01 100.0% 53.6%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 3.39e-01 79.2% 61.5%
4449501 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 50.0 3.78e-01 87.5% 58.3%
3933098 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 53.0 4.84e-01 95.8% 69.2%
5074419 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.64 50.0 4.62e-01 89.6% 66.2%
4938030 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.21e-01 100.0% 17.4%
5035011 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 51.0 3.29e-01 93.8% 20.4%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.62 46.0 4.03e-01 89.6% 51.2%
4961843 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 49.0 3.17e-01 93.8% 19.1%
3933447 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 49.0 3.88e-01 91.7% 68.6%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.61 53.0 4.47e-01 100.0% 58.8%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 53.0 4.05e-01 97.9% 42.7%
3408937 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 53.0 4.47e-01 97.9% 61.3%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 53.0 4.04e-01 97.9% 42.7%
3991383 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 51.0 4.16e-01 93.8% 52.2%
3517888 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 53.0 4.33e-01 100.0% 58.9%
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.60 47.0 2.66e-01 87.5% 7.2%
3403381 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 50.0 3.97e-01 93.8% 48.0%
3797523 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 51.0 3.78e-01 97.9% 36.2%
3690077 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 51.0 3.23e-01 100.0% 59.2%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.60 45.0 4.37e-01 85.4% 85.7%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.59 41.0 3.78e-01 72.9% 58.5%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.26e-01 93.8% 22.5%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 51.0 4.15e-01 95.8% 52.2%
None — 0.58 51.0 2.82e-01 100.0% 23.2%
3616718 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.58 39.0 2.34e-01 70.8% 9.4%
4984648 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.58 43.0 3.83e-01 87.5% 53.8%
4991902 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.58 40.0 3.06e-01 75.0% 100.0%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.58 44.0 3.99e-01 83.3% 63.1%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.58 51.0 4.02e-01 100.0% 49.0%
4981502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.71e-01 91.7% 80.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.57 46.0 3.49e-01 100.0% 48.6%
4946524 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.70e-01 95.8% 71.8%
4029951 220.1.1.310 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.56 46.0 3.35e-01 93.8% 31.0%
4289808 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.55 35.0 3.18e-01 100.0% 44.3%
3882163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 2.59e-01 79.2% 23.1%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 49.0 3.82e-01 100.0% 92.0%
4940950 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.54 39.0 3.27e-01 75.0% 85.0%
4964910 300.1.1.25 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › TbsP_N 0.54 47.0 3.39e-01 97.9% 85.7%
3920672 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 47.0 3.79e-01 100.0% 52.2%
3480321 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 46.0 3.92e-01 97.9% 100.0%
3590189 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 41.0 2.98e-01 93.8% 54.4%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.83e-01 100.0% 86.7%