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OR420741.1__WOZ55653.1__CRP118_gp22__00022

Bact-Vir

OR420741.1__WOZ55653.1__CRP118_gp22__00022

Identity

Accession:
OR420741 ↗
Kingdom:
phage

Quality

52.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Shangxiadianvirus› Roseobacter_phage_CRP-118

TaxID: 3072843

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 127-184
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 37.0 2.34e-01 91.4% 10.7%
1qwyA01 2.40.50.290 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.34e-01 98.3% 72.6%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 38.0 4.27e-01 81.0% 100.0%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.53e-01 82.8% 47.4%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 42.0 4.27e-01 82.8% 96.4%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.55 46.0 3.71e-01 100.0% 64.0%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.55 42.0 3.57e-01 84.5% 57.1%
1v2yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 43.0 3.70e-01 93.1% 81.0%
2kl5A00 3.50.4.20 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 0.52 39.0 3.33e-01 87.9% 54.5%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.72e-01 81.0% 44.9%
7o85C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.40e-01 77.6% 87.0%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.51 34.0 3.01e-01 77.6% 43.0%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.51 38.0 3.47e-01 81.0% 74.7%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 39.0 2.66e-01 93.1% 73.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931770 376.1.1.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind 0.62 45.0 4.27e-01 100.0% 62.7%
4953502 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 42.0 4.09e-01 82.8% 63.1%
3262982 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 40.0 4.36e-01 89.7% 84.4%
4245485 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.62 43.0 3.35e-01 74.1% 76.3%
7555 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.60 44.0 3.74e-01 100.0% 46.1%
3187671 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 4.44e-01 82.8% 88.3%
5015298 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 40.0 4.21e-01 89.7% 84.0%
1153993 375.1.2.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › SOR_N 0.59 38.0 4.31e-01 89.7% 100.0%
3594960 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.40e-01 82.8% 98.0%
3824691 375.3.1.4 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › Zn_ribbon_20 0.56 40.0 4.18e-01 91.4% 94.0%
3604642 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.21e-01 82.8% 97.8%
3781930 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.55 40.0 3.94e-01 82.8% 93.8%
3692288 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 41.0 3.70e-01 82.8% 60.0%
3602943 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.93e-01 81.0% 88.0%
4026413 2003.1.5.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Bin3 0.53 39.0 2.50e-01 82.8% 83.3%
3880692 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 37.0 2.36e-01 74.1% 52.6%
5035795 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.52 42.0 3.37e-01 100.0% 82.1%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.80e-01 81.0% 86.7%
3483429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 2.97e-01 82.8% 61.4%
3925154 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.51 39.0 3.57e-01 89.7% 89.4%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 3.97e-01 89.7% 100.0%
3881976 375.1.1.142 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N 0.50 36.0 3.52e-01 89.7% 68.6%