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OR420741.1__WOZ55670.1__CRP118_gp39__00039
Bact-VirOR420741.1__WOZ55670.1__CRP118_gp39__00039
Identity
- Accession:
- OR420741 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Shangxiadianvirus›
Roseobacter_phage_CRP-118
TaxID: 3072843
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-140
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05257.23 best | CHAP | 32.8 | 1.10e-07 | 58.6% | 97.5% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.82 | 68.0 | 7.36e-01 | 100.0% | 100.0% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.81 | 67.0 | 7.07e-01 | 100.0% | 96.0% |
| 3gt2A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.78 | 66.0 | 6.72e-01 | 100.0% | 91.9% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.75 | 64.0 | 6.58e-01 | 100.0% | 93.3% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.74 | 65.0 | 6.36e-01 | 100.0% | 87.2% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 68.0 | 6.46e-01 | 100.0% | 96.3% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.68 | 61.0 | 5.52e-01 | 96.4% | 93.0% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.67 | 60.0 | 5.19e-01 | 96.4% | 77.1% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.67 | 62.0 | 5.34e-01 | 100.0% | 71.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 29.0 | 4.26e-01 | 99.3% | 100.0% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 46.0 | 4.78e-01 | 97.1% | 87.8% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 26.0 | 3.40e-01 | 91.4% | 86.1% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 30.0 | 3.65e-01 | 100.0% | 88.9% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 39.0 | 3.10e-01 | 81.4% | 98.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964422 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.87 | 84.0 | 7.97e-01 | 100.0% | 89.4% |
| 3279614 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.73 | 68.0 | 6.53e-01 | 100.0% | 89.0% |
| 4030940 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.70 | 66.0 | 6.35e-01 | 100.0% | 92.3% |
| 7408 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.68 | 60.0 | 5.50e-01 | 95.0% | 90.2% |
| 3615154 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.68 | 60.0 | 5.44e-01 | 95.0% | 92.9% |
| 3596620 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 61.0 | 5.39e-01 | 96.4% | 90.8% |
| 5006274 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.67 | 40.0 | 4.02e-01 | 75.0% | 57.9% |
| 1905738 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.67 | 63.0 | 6.19e-01 | 100.0% | 97.3% |
| 3702189 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.67 | 59.0 | 5.14e-01 | 95.0% | 91.0% |
| 3606829 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 60.0 | 5.23e-01 | 96.4% | 78.5% |
| 3598532 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.66 | 59.0 | 5.19e-01 | 96.4% | 88.3% |
| 5018860 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.65 | 58.0 | 5.65e-01 | 95.0% | 90.7% |
| 3736175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 32.0 | 4.08e-01 | 90.0% | 89.4% |
| 3999725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 33.0 | 4.08e-01 | 75.0% | 90.6% |
| 3721116 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 32.0 | 4.09e-01 | 87.1% | 95.3% |
| 3727542 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 33.0 | 4.09e-01 | 87.1% | 93.3% |
| 5039793 | 219.1.1.77 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 | 0.55 | 49.0 | 4.28e-01 | 95.7% | 97.6% |
| 3268923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 35.0 | 4.00e-01 | 97.1% | 86.7% |
| 5056599 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.54 | 49.0 | 4.79e-01 | 98.6% | 98.0% |
| 4937587 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 48.0 | 4.54e-01 | 98.6% | 93.3% |
| 3275615 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.51 | 37.0 | 3.89e-01 | 76.4% | 89.9% |
| 3689576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 3.77e-01 | 82.1% | 75.5% |
D2
medium
residues 152-207
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.86 | 76.0 | 7.19e-01 | 100.0% | 82.4% |
| 2iskA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.78 | 58.0 | 3.93e-01 | 89.3% | 22.8% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.76 | 52.0 | 3.67e-01 | 71.4% | 24.5% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 66.0 | 5.35e-01 | 100.0% | 51.9% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 66.0 | 6.22e-01 | 98.2% | 89.6% |
| 3hinA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.74 | 53.0 | 5.35e-01 | 75.0% | 76.4% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.73 | 64.0 | 4.51e-01 | 98.2% | 33.5% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.73 | 50.0 | 3.03e-01 | 71.4% | 44.4% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.72 | 55.0 | 4.22e-01 | 85.7% | 36.2% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 62.0 | 6.22e-01 | 100.0% | 100.0% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 54.0 | 4.29e-01 | 85.7% | 100.0% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 52.0 | 4.30e-01 | 89.3% | 43.7% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 61.0 | 5.45e-01 | 98.2% | 71.8% |
| 2gw1A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 51.0 | 3.08e-01 | 78.6% | 12.2% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.69 | 59.0 | 4.86e-01 | 96.4% | 58.7% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 58.0 | 4.43e-01 | 100.0% | 75.0% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.67 | 55.0 | 4.18e-01 | 100.0% | 39.9% |
| 2bnxB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 52.0 | 3.38e-01 | 85.7% | 37.5% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.66 | 55.0 | 5.42e-01 | 98.2% | 96.7% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.61 | 43.0 | 4.27e-01 | 78.6% | 72.4% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 44.0 | 3.67e-01 | 85.7% | 48.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514853 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.94 | 85.0 | 7.57e-01 | 96.4% | 72.0% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.83 | 74.0 | 6.74e-01 | 100.0% | 74.7% |
| 3905033 | 3567.1.1.9 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › CECR6_TMEM121 | 0.82 | 73.0 | 4.88e-01 | 98.2% | 31.5% |
| 4655609 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.76 | 66.0 | 4.82e-01 | 100.0% | 36.1% |
| 3699638 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 61.0 | 3.43e-01 | 96.4% | 20.2% |
| 57654 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.62 | 50.0 | 5.09e-01 | 100.0% | 100.0% |