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OR420744.1__WMM95358.1__HTVC134P_gp6__00006

Bact-Vir

OR420744.1__WMM95358.1__HTVC134P_gp6__00006

Identity

Accession:
OR420744 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagibacter_phage_HTVC134P

TaxID: 3072836

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 45.0 4.06e-01 77.3% 73.5%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.99e-01 97.3% 100.0%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 3.96e-01 77.3% 59.2%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.60 45.0 4.12e-01 80.0% 98.0%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 44.0 2.97e-01 80.0% 78.5%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.59e-01 77.3% 61.0%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 50.0 3.75e-01 100.0% 93.5%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.56e-01 96.0% 89.9%
1v72A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 44.0 3.13e-01 86.7% 47.9%
2hekA02 3.30.70.1370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › HD domain like 0.56 41.0 3.91e-01 78.7% 88.6%
1xtzA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 39.0 3.82e-01 78.7% 66.7%
2b7nA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.55 35.0 2.97e-01 77.3% 38.6%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.63e-01 77.3% 93.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.38e-01 72.0% 84.8%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.56e-01 77.3% 91.8%
4lr2A02 3.30.1360.180 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 39.0 3.59e-01 97.3% 61.5%
1e5xA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 2.90e-01 92.0% 59.3%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 39.0 2.92e-01 82.7% 79.9%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.32e-01 77.3% 67.8%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.52 36.0 3.00e-01 77.3% 39.6%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.10e-01 74.7% 69.9%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.34e-01 77.3% 96.3%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.44e-01 98.7% 84.8%
4illB01 2.40.30.310 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 36.0 3.25e-01 77.3% 69.8%
1vcaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.43e-01 74.7% 82.0%
2ychA02 3.30.1490.300 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.50 36.0 3.95e-01 77.3% 100.0%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.28e-01 78.7% 69.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3882927 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.60 51.0 3.57e-01 100.0% 77.8%
4993583 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 45.0 3.88e-01 97.3% 51.7%
2137789 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.58 42.0 3.78e-01 77.3% 56.5%
4671096 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.58 42.0 3.54e-01 77.3% 49.2%
3875020 312.1.1.19 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 0.58 51.0 4.01e-01 97.3% 56.1%
5041306 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 38.0 3.80e-01 77.3% 63.7%
5052024 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 41.0 3.94e-01 77.3% 65.9%
3536897 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.57 42.0 3.63e-01 77.3% 64.3%
3898502 12.5.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.57 50.0 4.16e-01 100.0% 67.4%
3594306 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 40.0 3.79e-01 77.3% 60.0%
4020218 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.56 40.0 3.03e-01 77.3% 54.1%
5020745 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 40.0 3.73e-01 77.3% 96.8%
4028387 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 39.0 3.67e-01 77.3% 60.0%
3593297 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 40.0 3.53e-01 77.3% 55.5%
3972301 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 41.0 3.71e-01 81.3% 66.7%
5202 304.5.1.1 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.55 39.0 3.62e-01 77.3% 93.0%
4943895 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 2.85e-01 77.3% 35.9%
4619102 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 39.0 3.55e-01 77.3% 63.8%
4679680 312.1.1.12 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DUF4931_C 0.53 44.0 4.00e-01 93.3% 90.5%
4929491 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.53 38.0 3.42e-01 77.3% 57.8%
5023023 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.52 46.0 3.52e-01 100.0% 93.9%
4966643 304.5.1.1 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.52 38.0 3.45e-01 77.3% 57.1%
3927924 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.52 35.0 3.31e-01 77.3% 56.4%
3581246 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.45e-01 78.7% 86.7%
2093009 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.52 37.0 3.50e-01 77.3% 66.7%
4999329 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 41.0 3.10e-01 89.3% 91.7%
5024288 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.51 42.0 3.79e-01 100.0% 65.7%
4567374 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.51 37.0 2.93e-01 78.7% 55.3%
3927897 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.51 34.0 3.34e-01 77.3% 62.4%
3413150 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.51 37.0 3.37e-01 77.3% 78.0%
3784198 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 37.0 3.34e-01 78.7% 72.4%
3702503 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 37.0 3.49e-01 78.7% 71.1%
4403880 310.3.1.8 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM_b 0.50 45.0 3.60e-01 100.0% 53.1%