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OR420748.1__WMM95574.1__CRP143_gp9__00009

Bact-Vir

OR420748.1__WMM95574.1__CRP143_gp9__00009

Identity

Accession:
OR420748 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.82 57.0 5.81e-01 79.3% 75.0%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.76 55.0 5.13e-01 96.6% 61.6%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.76 56.0 5.39e-01 100.0% 69.7%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 65.0 4.92e-01 100.0% 45.0%
2l4eA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 53.0 5.35e-01 98.3% 78.9%
1oaiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 54.0 5.42e-01 100.0% 79.7%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 55.0 4.80e-01 79.3% 63.4%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.72 62.0 4.72e-01 100.0% 46.9%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.72 50.0 3.67e-01 72.4% 79.7%
1v92A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 52.0 5.61e-01 100.0% 100.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.71 59.0 5.25e-01 96.6% 79.5%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.14e-01 74.1% 83.6%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 51.0 5.57e-01 98.3% 100.0%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 59.0 4.99e-01 94.8% 61.9%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.69 47.0 2.96e-01 72.4% 45.8%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.25e-01 74.1% 100.0%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.68 61.0 4.98e-01 98.3% 56.3%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.68 60.0 5.96e-01 98.3% 96.7%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 51.0 4.15e-01 94.8% 44.7%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.67 59.0 5.06e-01 98.3% 62.4%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.67 56.0 5.28e-01 98.3% 82.2%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.67 45.0 2.87e-01 70.7% 63.9%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.67 56.0 4.50e-01 100.0% 52.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.66 53.0 5.00e-01 89.7% 76.1%
3w0lD01 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 56.0 4.70e-01 96.6% 55.4%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.65 53.0 4.51e-01 87.9% 75.8%
6vvoC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 49.0 4.81e-01 96.6% 81.2%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.63 50.0 4.73e-01 89.7% 73.6%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.62 51.0 4.60e-01 96.6% 69.0%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.61 48.0 4.53e-01 82.8% 83.8%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.61 41.0 4.48e-01 70.7% 91.1%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.60 50.0 3.15e-01 89.7% 53.9%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.60 47.0 4.78e-01 93.1% 96.4%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.58 48.0 3.12e-01 89.7% 59.4%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.58 47.0 3.10e-01 94.8% 47.8%
5j6bD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 51.0 3.22e-01 96.6% 61.7%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.57 46.0 4.17e-01 96.6% 64.2%
2j6lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 46.0 3.02e-01 96.6% 44.0%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 49.0 3.12e-01 94.8% 58.4%
3r64A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 49.0 3.15e-01 96.6% 62.8%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.56 47.0 4.10e-01 96.6% 71.4%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 49.0 3.07e-01 96.6% 59.7%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 48.0 3.08e-01 96.6% 64.9%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 42.0 4.30e-01 91.4% 90.9%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 50.0 3.14e-01 100.0% 60.5%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 48.0 3.11e-01 100.0% 69.2%
1iokA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.54 44.0 3.83e-01 91.4% 87.0%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 45.0 2.92e-01 94.8% 57.7%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 48.0 2.99e-01 100.0% 59.3%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.51e-01 82.8% 73.3%
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.22e-01 96.6% 69.7%
7o49B01 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.28e-01 79.3% 67.0%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 44.0 3.65e-01 100.0% 90.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034431 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.84 57.0 4.19e-01 74.1% 29.3%
4952111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.82 56.0 4.08e-01 74.1% 28.3%
3995392 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.81 58.0 6.42e-01 100.0% 97.8%
3530883 103.1.1.28 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.81 59.0 6.50e-01 100.0% 100.0%
3583897 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 62.0 5.80e-01 96.6% 70.0%
3608656 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.78 54.0 6.05e-01 94.8% 100.0%
3215052 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.77 56.0 4.86e-01 75.9% 62.4%
5024114 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.77 57.0 4.18e-01 79.3% 32.1%
4992111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.76 54.0 4.04e-01 74.1% 31.9%
3796068 148.1.3.40 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.76 59.0 5.03e-01 100.0% 52.6%
3233327 103.1.1.143 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N 0.75 55.0 5.47e-01 100.0% 76.7%
3289310 103.12.1.1 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.70 49.0 5.07e-01 74.1% 89.1%
4974573 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.70 55.0 5.02e-01 100.0% 65.3%
3610989 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.69 46.0 3.78e-01 70.7% 36.4%
3278934 103.12.1.1 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.69 55.0 5.52e-01 89.7% 96.7%
4042777 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.69 57.0 5.02e-01 94.8% 64.4%
3587994 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.69 51.0 4.80e-01 79.3% 74.3%
3697200 4049.1.1.2 alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › Sirohm_synth_C 0.68 55.0 5.10e-01 91.4% 81.3%
4441062 3962.1.1.3 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › YtxK_like 0.68 51.0 4.43e-01 79.3% 58.8%
4995939 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.68 54.0 4.36e-01 84.5% 50.5%
5023625 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.67 54.0 4.36e-01 84.5% 50.0%
4954174 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.67 58.0 5.08e-01 100.0% 80.0%
3782919 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.66 51.0 4.34e-01 82.8% 71.1%
3796793 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.65 53.0 4.89e-01 96.6% 71.2%
4174469 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.64 57.0 3.86e-01 100.0% 44.7%
4935021 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.64 54.0 4.81e-01 100.0% 66.7%
5070580 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.64 54.0 5.43e-01 100.0% 100.0%
4545640 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.74e-01 96.6% 69.4%
3722053 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 53.0 4.74e-01 100.0% 65.9%
4955004 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.63 49.0 4.90e-01 91.4% 98.3%
5057411 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.63 54.0 4.81e-01 93.1% 71.2%
4042981 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.62 51.0 4.48e-01 89.7% 64.7%
4015710 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 55.0 4.85e-01 100.0% 78.8%
4026470 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.61 53.0 3.95e-01 100.0% 63.4%
3796702 2002.1.1.41 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.61 53.0 3.25e-01 100.0% 89.9%
4595959 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.60 53.0 4.73e-01 94.8% 88.7%
4522200 3684.1.1.1 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF615 0.60 41.0 3.74e-01 74.1% 77.6%
4993602 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.60 53.0 5.17e-01 100.0% 96.8%
4952821 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.60 50.0 3.14e-01 89.7% 55.0%
4600188 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.57 49.0 3.15e-01 94.8% 59.2%
4031360 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.57 49.0 3.11e-01 94.8% 52.8%
4135810 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 49.0 3.10e-01 94.8% 52.1%
3280807 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 48.0 3.14e-01 94.8% 52.6%
3184693 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 49.0 3.07e-01 94.8% 49.7%
5004667 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.55 45.0 3.99e-01 100.0% 100.0%
5061758 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 44.0 4.07e-01 87.9% 81.3%
1901369 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.54 50.0 3.22e-01 100.0% 68.9%
1901910 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.54 49.0 3.21e-01 100.0% 70.9%
3264573 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.54 47.0 3.00e-01 94.8% 55.9%
5061725 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.53 43.0 3.91e-01 89.7% 75.0%
3318544 150.1.1.78 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rx_N 0.51 40.0 3.59e-01 84.5% 100.0%
4169890 5.1.11.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel 0.51 45.0 2.60e-01 100.0% 19.6%