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OR420748.1__WMM95581.1__CRP143_gp16__00016

Bact-Vir

OR420748.1__WMM95581.1__CRP143_gp16__00016

Identity

Accession:
OR420748 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Roseobacter_phage_CRP-143

TaxID: 3072845

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.49e-01 72.5% 79.2%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 45.0 3.21e-01 70.6% 78.4%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 50.0 2.97e-01 90.2% 36.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.55e-01 76.5% 85.4%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 51.0 3.33e-01 98.0% 91.0%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 46.0 2.99e-01 86.3% 95.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 48.0 4.08e-01 100.0% 86.2%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.07e-01 94.1% 59.3%
2vpzA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 51.0 3.54e-01 100.0% 58.5%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.57 47.0 2.87e-01 92.2% 22.9%
2aeeB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.13e-01 92.2% 36.9%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 49.0 3.99e-01 100.0% 89.7%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 3.09e-01 92.2% 59.4%
3vz3A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 41.0 2.73e-01 84.3% 85.2%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.16e-01 90.2% 87.2%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 38.0 2.68e-01 72.5% 22.1%
6jx5A01 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.54 37.0 3.39e-01 72.5% 69.3%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 2.90e-01 88.2% 36.5%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 35.0 2.97e-01 72.5% 69.1%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.51 39.0 3.09e-01 88.2% 71.5%
6k8nA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.10e-01 96.1% 88.6%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.31e-01 92.2% 59.0%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.50 39.0 3.97e-01 94.1% 86.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020026 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.70 49.0 4.06e-01 72.5% 94.1%
4169299 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 49.0 3.86e-01 80.4% 36.7%
2841988 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.67 53.0 3.94e-01 90.2% 80.1%
3442291 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.67 49.0 2.84e-01 78.4% 43.9%
4996799 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.66 45.0 3.85e-01 72.5% 50.6%
3799664 2485.1.1.60 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 1-cysPrx_C 0.64 47.0 3.45e-01 76.5% 51.9%
4659212 7516.1.1.5 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD 0.64 47.0 3.04e-01 78.4% 94.1%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.63 42.0 4.19e-01 70.6% 70.9%
4928248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 3.19e-01 74.5% 56.9%
3250206 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.62 47.0 4.24e-01 100.0% 58.7%
86702 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.59 41.0 4.16e-01 74.5% 86.5%
3511414 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.59 49.0 2.90e-01 92.2% 76.4%
4002635 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.59 43.0 3.10e-01 78.4% 29.0%
5068734 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.59 42.0 3.02e-01 80.4% 27.1%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.58 39.0 3.78e-01 72.5% 60.3%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.58 39.0 3.91e-01 72.5% 67.3%
3444901 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.58 52.0 3.54e-01 98.0% 45.7%
3604599 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.58 44.0 3.55e-01 90.2% 42.0%
4996620 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.72e-01 84.3% 65.6%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.57 50.0 4.79e-01 100.0% 96.7%
3960045 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 48.0 3.99e-01 94.1% 74.4%
4029105 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 47.0 4.42e-01 100.0% 93.8%
5021584 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.57 44.0 2.87e-01 88.2% 62.0%
4961561 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.56 47.0 2.81e-01 96.1% 88.4%
3280942 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.55 42.0 2.83e-01 92.2% 99.6%
4945974 7604.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydantoinase_A 0.54 45.0 3.43e-01 96.1% 95.4%
4968768 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.53 38.0 4.21e-01 76.5% 97.5%
3784394 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 38.0 2.28e-01 82.4% 22.6%
4116094 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.52 43.0 3.46e-01 100.0% 60.9%
5022868 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.52 45.0 3.82e-01 100.0% 71.6%
3183857 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 44.0 3.51e-01 100.0% 67.3%
3781153 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 41.0 3.57e-01 98.0% 63.3%
3205871 173.1.1.0 ↗ alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.51 38.0 3.53e-01 92.2% 60.8%
3355067 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.51 36.0 3.01e-01 80.4% 41.0%
3227370 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.50 43.0 3.21e-01 96.1% 60.0%