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OR420752.1__WMM95715.1__CRP403_gp1__00001

Bact-Vir

OR420752.1__WMM95715.1__CRP403_gp1__00001

Identity

Accession:
OR420752 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Shangxiadianvirus› Roseobacter_phage_CRP-403

TaxID: 3072849

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.72 56.0 5.72e-01 98.1% 90.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 62.0 5.52e-01 100.0% 73.7%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 51.0 4.47e-01 100.0% 52.4%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 51.0 4.34e-01 100.0% 48.9%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 48.0 3.72e-01 100.0% 35.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 52.0 4.82e-01 100.0% 69.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 55.0 3.87e-01 98.1% 31.1%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 3.86e-01 100.0% 44.2%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 49.0 3.99e-01 100.0% 44.7%
2dliA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.11e-01 100.0% 48.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 51.0 3.64e-01 100.0% 37.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 52.0 4.33e-01 98.1% 56.5%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 41.0 2.88e-01 71.2% 48.2%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.88e-01 100.0% 47.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 51.0 4.25e-01 100.0% 55.2%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 47.0 3.82e-01 100.0% 44.0%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.71e-01 100.0% 40.7%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 49.0 3.95e-01 100.0% 48.6%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 3.54e-01 100.0% 73.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 48.0 4.06e-01 100.0% 62.0%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 37.0 2.79e-01 100.0% 25.4%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.78e-01 100.0% 51.6%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 40.0 2.88e-01 78.8% 96.3%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 47.0 3.87e-01 100.0% 93.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.55 45.0 3.46e-01 100.0% 37.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.55 44.0 3.24e-01 100.0% 36.9%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 45.0 3.47e-01 100.0% 97.0%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 2.88e-01 100.0% 29.1%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 39.0 3.56e-01 82.7% 79.2%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.54 46.0 3.36e-01 100.0% 34.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 44.0 3.76e-01 100.0% 56.4%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.50e-01 100.0% 98.3%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.35e-01 100.0% 46.5%
1t8hA00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.52 42.0 2.77e-01 100.0% 19.1%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 41.0 3.72e-01 100.0% 68.3%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 42.0 3.44e-01 100.0% 47.3%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.50 40.0 3.50e-01 100.0% 69.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.86 69.0 7.08e-01 100.0% 88.0%
4977431 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.85 77.0 7.03e-01 100.0% 76.9%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.80 65.0 6.66e-01 100.0% 92.0%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.80 63.0 6.75e-01 98.1% 97.8%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.76 70.0 6.93e-01 100.0% 98.2%
4032618 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.75 66.0 6.48e-01 100.0% 90.9%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.75 56.0 5.95e-01 100.0% 95.6%
5014007 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.74 60.0 5.89e-01 100.0% 83.6%
5015713 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.71 64.0 6.13e-01 100.0% 98.3%
3881982 2492.1.1.14 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC_N 0.68 58.0 4.04e-01 100.0% 33.7%
4568546 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 57.0 4.39e-01 100.0% 46.2%
4333681 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 55.0 4.25e-01 100.0% 45.8%
3338688 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 54.0 5.10e-01 100.0% 90.8%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 49.0 4.19e-01 100.0% 52.2%
3917143 304.100.1.0 ↗ a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.61 52.0 5.05e-01 100.0% 96.7%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.59 51.0 4.55e-01 98.1% 96.0%
3941935 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 50.0 3.97e-01 100.0% 47.0%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 43.0 3.34e-01 100.0% 32.6%
3942510 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.58 46.0 3.94e-01 100.0% 51.6%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.58 47.0 4.29e-01 100.0% 66.7%
5040307 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 50.0 4.67e-01 98.1% 78.5%
3704667 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 41.0 2.55e-01 76.9% 77.9%
3556688 288.1.1.5 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › N_Asn_amidohyd 0.57 50.0 3.13e-01 100.0% 18.6%
1546392 10.2.1.66 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV-like_capsid 0.55 49.0 3.38e-01 100.0% 58.3%
3941016 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 42.0 3.37e-01 100.0% 55.6%
3398228 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.53 38.0 3.27e-01 84.6% 97.0%
3413058 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 42.0 3.64e-01 100.0% 64.4%