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OR420754.1__WMM95804.1__HTVC142P_gp38__00038

Bact-Vir

OR420754.1__WMM95804.1__HTVC142P_gp38__00038

Identity

Accession:
OR420754 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagivirus› Pelagibacter_phage_HTVC142P

TaxID: 3072837

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 114-206
PDB
D2 medium residues 412-496
PDB
Domain cluster: rep: IMGVR_UViG_3300025317_000379-3300025317-Ga0209541_100625042__D773-849
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.72 52.0 3.66e-01 75.3% 41.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 3.21e-01 74.1% 53.0%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.59 51.0 3.60e-01 100.0% 85.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.84e-01 87.1% 78.6%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 44.0 3.45e-01 83.5% 56.0%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 48.0 3.89e-01 95.3% 87.7%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.26e-01 100.0% 45.5%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.55 48.0 3.46e-01 98.8% 58.0%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 2.96e-01 74.1% 37.6%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 46.0 3.10e-01 100.0% 46.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.39e-01 84.7% 78.4%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.53 38.0 3.54e-01 75.3% 84.4%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 46.0 3.63e-01 97.6% 48.6%
2okxA04 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 37.0 3.63e-01 74.1% 93.5%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 46.0 3.61e-01 97.6% 47.5%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.52 37.0 3.13e-01 75.3% 51.0%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 37.0 3.04e-01 75.3% 79.9%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 43.0 3.01e-01 95.3% 46.7%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.51 42.0 2.82e-01 100.0% 44.3%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.50 36.0 3.49e-01 76.5% 66.0%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.98e-01 100.0% 54.8%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.50 36.0 3.70e-01 75.3% 82.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501831 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.71 50.0 3.74e-01 72.9% 58.0%
3931445 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.71 50.0 3.72e-01 72.9% 58.6%
4339016 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.69 49.0 4.60e-01 74.1% 68.6%
3415319 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 48.0 3.62e-01 72.9% 57.1%
3761305 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.69 48.0 3.63e-01 72.9% 57.6%
3527733 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.69 48.0 3.65e-01 72.9% 59.0%
3959060 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.69 49.0 3.91e-01 75.3% 76.3%
3956719 4252.1.1.14 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF30556 0.68 49.0 3.85e-01 75.3% 73.7%
3898844 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 48.0 3.59e-01 72.9% 59.0%
3228776 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 40.0 2.74e-01 70.6% 18.0%
3170091 243.1.1.116 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29059 0.63 44.0 4.07e-01 72.9% 85.5%
3664762 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 43.0 3.45e-01 74.1% 44.0%
3945984 5084.5.1.22 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 0.60 52.0 3.18e-01 100.0% 27.2%
3574513 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 52.0 4.06e-01 100.0% 64.1%
3239309 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.59 43.0 3.30e-01 75.3% 63.8%
3450764 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.57 41.0 3.41e-01 76.5% 52.3%
1562389 3308.2.1.0 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein 0.57 47.0 3.54e-01 90.6% 59.8%
4937333 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.56 47.0 4.89e-01 91.8% 97.5%
3965197 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.56 38.0 2.91e-01 70.6% 37.4%
3856864 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.55 38.0 3.26e-01 72.9% 46.9%
3711273 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.55 40.0 3.63e-01 76.5% 90.4%
3598605 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.54 43.0 2.81e-01 85.9% 30.1%
4975453 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 43.0 3.51e-01 90.6% 50.3%
3717067 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 42.0 2.78e-01 87.1% 26.7%
5046573 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 44.0 3.56e-01 90.6% 51.9%
3324823 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 36.0 3.12e-01 70.6% 92.6%
3633309 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 39.0 2.57e-01 82.4% 24.8%
3645444 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.25e-01 72.9% 90.8%
3799203 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.59e-01 100.0% 86.7%
3263006 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.51 43.0 3.50e-01 91.8% 51.9%
3696981 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 45.0 3.01e-01 100.0% 48.2%
3793643 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.78e-01 100.0% 31.3%
3173290 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 42.0 2.87e-01 97.6% 50.9%
3601782 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.96e-01 100.0% 70.3%
3609394 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 2.93e-01 100.0% 41.9%
3171592 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.50 42.0 2.79e-01 96.5% 80.0%
D3 medium residues 605-634_701-803
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00342__D202-325
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.76 67.0 7.03e-01 97.0% 100.0%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.62 42.0 4.91e-01 81.2% 100.0%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.61 31.0 3.36e-01 82.7% 55.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 29.0 3.33e-01 83.5% 77.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937267 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 69.0 7.29e-01 95.5% 100.0%
5033307 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 72.0 7.12e-01 100.0% 99.3%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.73 67.0 6.21e-01 97.0% 100.0%
3945288 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.69 64.0 6.21e-01 99.2% 100.0%
5083719 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.67 59.0 6.16e-01 96.2% 100.0%
3838081 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 30.0 3.60e-01 99.2% 65.6%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.62 45.0 5.04e-01 86.5% 100.0%
3994135 387.1.1.39 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › TIL_2 0.58 28.0 3.58e-01 78.9% 81.4%
3994103 389.2.1.3 ↗ few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 0.56 27.0 3.58e-01 78.9% 87.7%
4001979 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.54 26.0 3.34e-01 71.4% 81.4%
4001196 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.54 25.0 3.23e-01 97.0% 78.6%
4004124 389.4.1.0 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain 0.53 26.0 3.12e-01 71.4% 67.1%
4002600 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.53 26.0 2.72e-01 71.4% 45.5%