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OR428172.1__WNT43829.1__X__00023

Bact-Vir

OR428172.1__WNT43829.1__X__00023

Identity

Accession:
OR428172 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.72 56.0 4.50e-01 84.7% 52.5%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.68 36.0 4.48e-01 88.9% 84.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 52.0 4.79e-01 83.3% 97.8%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.66 46.0 4.69e-01 84.7% 75.0%
3hn5A02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 4.40e-01 84.7% 72.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 46.0 3.90e-01 75.0% 67.5%
3omzA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 50.0 4.47e-01 84.7% 78.6%
5fxdA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.64 47.0 3.38e-01 80.6% 83.3%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.64 38.0 4.71e-01 76.4% 100.0%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 56.0 4.61e-01 98.6% 77.4%
2dewX02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.63 49.0 3.84e-01 84.7% 55.3%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.63 50.0 3.76e-01 84.7% 54.9%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 56.0 4.49e-01 98.6% 63.6%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.82e-01 93.1% 78.0%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 3.91e-01 100.0% 53.5%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 52.0 4.19e-01 97.2% 73.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 51.0 3.93e-01 94.4% 99.4%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 50.0 4.19e-01 88.9% 67.5%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.35e-01 88.9% 64.4%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 50.0 4.32e-01 88.9% 69.7%
3lohE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.96e-01 88.9% 76.4%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 48.0 3.35e-01 87.5% 46.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 48.0 4.48e-01 94.4% 79.8%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 48.0 3.70e-01 94.4% 56.7%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 45.0 3.17e-01 87.5% 91.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.58 37.0 4.17e-01 84.7% 92.0%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.57 50.0 3.60e-01 100.0% 61.6%
1ej6A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.44e-01 93.1% 72.6%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.57 42.0 3.80e-01 81.9% 75.9%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.57 43.0 3.73e-01 83.3% 77.1%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.26e-01 94.4% 73.1%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.13e-01 94.4% 74.0%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.59e-01 94.4% 80.5%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.55 42.0 3.58e-01 83.3% 73.9%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 43.0 3.43e-01 86.1% 52.8%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 47.0 3.25e-01 100.0% 78.5%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.50e-01 86.1% 59.1%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.20e-01 97.2% 49.0%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 40.0 3.59e-01 88.9% 77.3%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 37.0 3.03e-01 75.0% 46.9%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 39.0 2.80e-01 84.7% 64.6%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 45.0 3.93e-01 97.2% 80.9%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.52 35.0 2.76e-01 73.6% 31.1%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 41.0 3.37e-01 90.3% 92.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.93e-01 88.9% 100.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.50 42.0 3.53e-01 97.2% 55.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3295157 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.78 60.0 3.96e-01 81.9% 44.3%
3251163 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.77 50.0 4.65e-01 83.3% 53.3%
3932239 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 54.0 4.79e-01 84.7% 79.0%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.68 52.0 5.52e-01 86.1% 98.3%
3686690 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.67 54.0 5.11e-01 87.5% 98.8%
3646829 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.67 47.0 5.19e-01 94.4% 98.2%
4985428 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.66 53.0 5.19e-01 88.9% 98.7%
3723377 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.66 55.0 4.52e-01 90.3% 69.6%
3282305 4187.1.1.0 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.64 45.0 4.58e-01 79.2% 75.7%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.64 53.0 5.43e-01 100.0% 95.7%
3712904 11.2.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CEP76-C2 0.64 57.0 4.19e-01 98.6% 56.8%
5053579 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.63 53.0 3.44e-01 88.9% 30.0%
4204478 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.52e-01 90.3% 72.4%
5043557 206.1.3.41 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.63 51.0 3.45e-01 87.5% 33.2%
5008116 304.24.1.39 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 0.62 53.0 4.89e-01 94.4% 98.9%
3503694 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.62 52.0 3.50e-01 88.9% 42.8%
5045395 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 47.0 4.13e-01 81.9% 97.2%
3557100 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.62 51.0 3.51e-01 88.9% 45.1%
3229807 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.62 51.0 4.99e-01 98.6% 85.0%
1507005 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.61 51.0 3.53e-01 88.9% 53.8%
4079239 264.1.1.4 beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.61 47.0 3.48e-01 83.3% 99.5%
4935672 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 47.0 3.78e-01 94.4% 42.9%
4311187 2004.1.1.107 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.61 45.0 3.02e-01 80.6% 82.3%
3590969 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 52.0 3.40e-01 93.1% 29.3%
4889364 304.56.1.3 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas3_I-F_Cas2 0.60 46.0 3.99e-01 84.7% 65.5%
4031839 264.1.1.9 beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.60 46.0 3.58e-01 84.7% 100.0%
None 0.60 49.0 3.44e-01 88.9% 42.1%
3629077 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.60 47.0 4.26e-01 83.3% 63.2%
3740916 1013.1.1.1 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 0.60 53.0 3.93e-01 97.2% 89.1%
5062623 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 49.0 3.60e-01 88.9% 42.2%
3252371 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.58 48.0 3.36e-01 88.9% 45.5%
3509065 221.7.1.3 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.57 46.0 4.44e-01 100.0% 77.6%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.57 44.0 3.53e-01 94.4% 40.9%
2056874 206.1.3.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.56 50.0 3.71e-01 98.6% 83.6%
3388200 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.56 41.0 3.77e-01 83.3% 74.3%
3233020 264.1.1.7 beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.55 44.0 3.33e-01 88.9% 99.5%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.55 40.0 2.89e-01 84.7% 25.5%
3281245 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.55 41.0 3.55e-01 83.3% 72.8%
3442726 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 38.0 2.18e-01 70.8% 8.4%
4987637 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 44.0 2.68e-01 88.9% 21.2%
3737669 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.54 45.0 3.95e-01 100.0% 70.8%
4971711 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.04e-01 73.6% 39.2%
939 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.50e-01 86.1% 59.1%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 39.0 2.88e-01 83.3% 28.2%
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.53 42.0 4.09e-01 91.7% 98.8%
3319149 224.1.1.3 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.53 43.0 3.48e-01 95.8% 76.8%
3215959 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 44.0 3.70e-01 94.4% 66.4%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 39.0 2.81e-01 84.7% 25.8%
3383616 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 38.0 2.22e-01 77.8% 9.7%
5058329 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 42.0 3.08e-01 93.1% 100.0%
4948799 281.1.1.0 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase 0.52 47.0 3.62e-01 100.0% 80.0%
3420651 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.51 43.0 2.83e-01 95.8% 37.9%
3994703 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 43.0 3.67e-01 95.8% 72.5%
3307527 109.4.1.619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.51 44.0 3.60e-01 97.2% 94.8%
2982157 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.51 40.0 3.09e-01 91.7% 54.0%
4029631 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.50 42.0 3.76e-01 95.8% 65.7%
1917149 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.50 37.0 3.40e-01 84.7% 68.8%
3379603 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.50 43.0 2.46e-01 95.8% 16.9%