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OR428172.1__WNT43890.1__X__00084

Bact-Vir

OR428172.1__WNT43890.1__X__00084

Identity

Accession:
OR428172 ↗
Kingdom:
phage

Quality

60.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Teubervirus› Lactococcus_phage_PMBT68

TaxID: 3075951

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
D2 high residues 78-163
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 46.0 4.22e-01 82.6% 97.3%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 3.99e-01 77.9% 64.2%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 44.0 3.57e-01 82.6% 83.1%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 34.0 3.49e-01 100.0% 59.3%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.55 42.0 3.75e-01 81.4% 86.2%
3g3tA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.54 44.0 3.11e-01 88.4% 60.2%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.54 38.0 3.43e-01 73.3% 97.6%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.42e-01 82.6% 67.6%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 46.0 3.53e-01 96.5% 74.1%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.52 37.0 3.19e-01 73.3% 86.0%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.74e-01 86.0% 87.1%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.22e-01 72.1% 62.7%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.34e-01 76.7% 87.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930398 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.44e-01 80.2% 100.0%
3226909 331.15.1.0 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.60 41.0 4.42e-01 82.6% 82.7%
4132764 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 35.0 3.56e-01 100.0% 60.0%
1115776 295.1.1.5 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.58 44.0 3.41e-01 79.1% 74.7%
1346676 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.58 43.0 3.99e-01 77.9% 64.2%
3979569 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 4.15e-01 84.9% 97.3%
3656013 11.1.1.912 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28397 0.57 39.0 3.91e-01 72.1% 92.2%
3233723 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 37.0 3.47e-01 70.9% 85.5%
3725804 868.1.1.4 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › VTC 0.54 43.0 3.03e-01 88.4% 57.2%
1678534 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.54 36.0 3.69e-01 70.9% 69.8%
3266884 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 36.0 2.88e-01 70.9% 46.1%
3633088 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.54e-01 76.7% 23.5%
3600442 6165.1.1.0 ↗ beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain 0.52 36.0 2.71e-01 73.3% 85.1%
3932481 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 44.0 3.87e-01 94.2% 94.6%
3460166 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.29e-01 72.1% 95.7%
3923656 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 43.0 3.73e-01 94.2% 87.9%
3621690 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 33.0 3.16e-01 94.2% 55.2%
3507332 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.50 42.0 3.64e-01 94.2% 91.4%
3933536 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.50 42.0 3.66e-01 94.2% 91.1%
3926560 2484.1.1.212 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.50 42.0 3.65e-01 94.2% 88.9%