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OR428172.1__WNT43891.1__X__00085

Bact-Vir

OR428172.1__WNT43891.1__X__00085

Identity

Accession:
OR428172 ↗
Kingdom:
phage

Quality

61.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Teubervirus› Lactococcus_phage_PMBT68

TaxID: 3075951

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-44_62-121
PDB
D2 medium residues 122-178_256-266
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.66 55.0 4.54e-01 94.1% 72.4%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 47.0 3.42e-01 83.8% 29.8%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.63 44.0 2.77e-01 73.5% 68.9%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.61 47.0 3.80e-01 83.8% 65.2%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 46.0 3.80e-01 85.3% 100.0%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 40.0 2.95e-01 80.9% 27.3%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.58 38.0 4.14e-01 82.4% 86.8%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 43.0 3.42e-01 85.3% 94.6%
4mmoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 37.0 2.55e-01 76.5% 90.0%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 37.0 2.58e-01 77.9% 70.3%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 36.0 3.48e-01 76.5% 83.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3713826 541.1.1.4 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Radial_spoke 0.59 43.0 4.55e-01 77.9% 88.3%
3236950 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 36.0 3.64e-01 70.6% 61.4%
3337186 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.56 38.0 3.53e-01 70.6% 71.1%
3474795 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.55 47.0 3.47e-01 98.5% 75.8%
3919567 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.55 37.0 3.38e-01 70.6% 78.9%
3763290 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 3.32e-01 80.9% 65.4%
3280174 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.54 43.0 4.02e-01 92.6% 69.4%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.54 36.0 3.55e-01 70.6% 100.0%
3921299 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.53 36.0 2.43e-01 73.5% 56.8%
5018005 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 44.0 2.63e-01 97.1% 65.8%
D3 medium residues 179-255
PDB
D4 medium residues 267-302_374-411
PDB
D5 medium residues 330-373
PDB