←Back to structures
OR434025.1__WNM69774.1__SEA_CRATER_67__00067
Bact-VirOR434025.1__WNM69774.1__SEA_CRATER_67__00067
Identity
- Accession:
- OR434025 ↗
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Taxonomy
TaxID: 3077143
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-128
Domain cluster:
rep: NC_031247.1__YP_009302809.1__BJD67_gp52__00052__D8-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24076.2 best | DUF7368 | 46.9 | 3.90e-12 | 97.5% | 39.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 40.0 | 3.66e-01 | 79.7% | 48.1% |
| 4qreA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.62 | 45.0 | 3.50e-01 | 75.9% | 77.5% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.60 | 43.0 | 3.54e-01 | 75.9% | 84.1% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.57 | 40.0 | 3.44e-01 | 73.4% | 59.4% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.57 | 34.0 | 3.33e-01 | 82.3% | 51.6% |
| 2l10A00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.54 | 47.0 | 3.84e-01 | 100.0% | 61.4% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 42.0 | 3.68e-01 | 87.3% | 64.5% |
| 6oi7A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 44.0 | 3.39e-01 | 96.2% | 82.7% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.52 | 39.0 | 3.70e-01 | 82.3% | 81.8% |
| 1m56C02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.52 | 42.0 | 3.13e-01 | 87.3% | 51.5% |
| 3llmA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.98e-01 | 87.3% | 68.9% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.50 | 40.0 | 3.58e-01 | 89.9% | 79.7% |
| 2plyB01 | 1.10.10.2770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 39.0 | 3.36e-01 | 87.3% | 88.4% |
| 3bg2A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 42.0 | 3.29e-01 | 97.5% | 79.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591241 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.69 | 47.0 | 4.67e-01 | 72.2% | 69.4% |
| 3410327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 51.0 | 4.88e-01 | 89.9% | 76.7% |
| 1154882 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.62 | 45.0 | 4.09e-01 | 79.7% | 57.5% |
| 3399010 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.60 | 44.0 | 2.96e-01 | 78.5% | 92.2% |
| 3628153 | 109.4.1.517 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med24_N | 0.59 | 47.0 | 3.40e-01 | 89.9% | 44.5% |
| 3465983 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 42.0 | 3.44e-01 | 78.5% | 63.6% |
| 3826046 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.56 | 38.0 | 3.09e-01 | 70.9% | 37.0% |
| 3591988 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 45.0 | 3.00e-01 | 89.9% | 80.9% |
| 3448422 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.55 | 41.0 | 3.20e-01 | 82.3% | 53.7% |
| 3480984 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.54 | 45.0 | 2.61e-01 | 88.6% | 15.1% |
| 3576710 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 44.0 | 4.37e-01 | 92.4% | 100.0% |
| 3781156 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.52 | 40.0 | 3.02e-01 | 88.6% | 31.6% |
| 5042001 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.52 | 38.0 | 2.62e-01 | 81.0% | 20.0% |
| 3695189 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 41.0 | 2.94e-01 | 91.1% | 37.3% |
| 5012670 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 44.0 | 3.39e-01 | 98.7% | 87.4% |
| 3370936 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.51 | 41.0 | 3.97e-01 | 92.4% | 91.1% |
| 3699638 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.43e-01 | 91.1% | 34.7% |
| 3601402 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 42.0 | 2.80e-01 | 93.7% | 78.2% |