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OR472329.1__WNO47213.1__X__00047

Bact-Vir

OR472329.1__WNO47213.1__X__00047

Identity

Accession:
OR472329 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-185
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26128.2 best Gad2 58.8 8.60e-16 90.8% 81.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.74 55.0 6.06e-01 89.1% 94.3%
1miwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.71 49.0 5.46e-01 82.2% 90.3%
3wfoA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 56.0 5.85e-01 89.1% 96.2%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.67 45.0 5.19e-01 80.5% 95.2%
4wcwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 40.0 4.83e-01 74.7% 91.9%
3er9B03 3.30.460.60 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Poxvirus poly(A) polymerase, nucleotidyltransferase domain 0.65 43.0 4.79e-01 80.5% 85.7%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 42.0 4.78e-01 83.3% 97.6%
1no5B00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 35.0 4.33e-01 81.6% 98.0%
6w1kA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.57 43.0 3.64e-01 78.2% 93.3%
1wotA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 32.0 4.06e-01 78.2% 96.9%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 37.0 4.28e-01 82.2% 93.8%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 36.0 4.09e-01 71.8% 87.4%
1ylqA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 30.0 3.89e-01 76.4% 100.0%
2rffA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 32.0 3.83e-01 81.0% 90.1%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4495995 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.78 54.0 6.21e-01 84.5% 93.8%
3640795 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.77 62.0 5.68e-01 85.1% 66.5%
4944306 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.70 58.0 5.89e-01 90.2% 86.9%
3960020 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.66 54.0 5.55e-01 86.8% 90.3%
3950526 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.66 54.0 5.60e-01 86.8% 93.1%
5074217 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 51.0 4.97e-01 81.6% 88.4%
4970293 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.62 48.0 5.04e-01 81.0% 90.3%
5080934 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.62 48.0 4.22e-01 81.0% 66.8%
4937758 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.61 34.0 4.45e-01 78.2% 100.0%
5054232 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.61 35.0 4.38e-01 79.3% 97.0%
3195479 316.1.1.10 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.60 43.0 3.78e-01 74.1% 90.6%
4993097 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.60 38.0 4.57e-01 82.8% 100.0%
4937865 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 36.0 4.44e-01 78.2% 98.1%
5028445 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.59 36.0 4.37e-01 81.0% 95.4%
5058173 316.1.1.39 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 0.59 46.0 4.36e-01 81.6% 77.6%
4938037 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 35.0 4.38e-01 78.2% 96.2%
6810 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 35.0 4.34e-01 79.3% 98.0%
4426543 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.59 39.0 3.94e-01 76.4% 63.9%
3723794 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 46.0 4.21e-01 81.6% 100.0%
4998666 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 45.0 4.27e-01 79.9% 87.6%
5022567 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 46.0 4.85e-01 82.2% 92.5%
5018203 316.1.1.41 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 0.59 46.0 4.34e-01 81.6% 76.2%
5069373 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 40.0 4.49e-01 83.3% 88.9%
4993512 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 38.0 4.49e-01 81.0% 98.2%
4948129 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 35.0 4.37e-01 77.6% 98.1%
3197454 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 49.0 4.46e-01 88.5% 83.1%
5044819 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 45.0 4.27e-01 81.6% 90.2%
4992530 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 35.0 4.31e-01 77.6% 100.0%
4956215 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 45.0 4.19e-01 83.3% 71.8%
3198176 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 45.0 4.38e-01 82.2% 96.8%
5079184 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 45.0 4.35e-01 82.8% 83.1%
3726440 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 45.0 4.46e-01 83.3% 99.5%
5079507 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 41.0 4.48e-01 81.6% 92.1%
4979743 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 44.0 4.19e-01 81.6% 86.8%
4972593 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.56 36.0 4.25e-01 81.6% 98.2%
4064121 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 38.0 3.78e-01 82.8% 65.0%
None 0.56 43.0 4.45e-01 80.5% 93.4%
5032022 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 34.0 4.14e-01 82.2% 97.1%
4968136 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 40.0 4.16e-01 82.2% 79.4%
5038425 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 34.0 4.20e-01 79.3% 100.0%
5030913 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 38.0 3.95e-01 82.8% 75.5%
4933019 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 36.0 4.26e-01 83.3% 100.0%
5057929 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 36.0 4.29e-01 81.0% 95.8%
5032234 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.55 34.0 4.05e-01 79.3% 92.7%
4461227 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 38.0 3.92e-01 82.8% 74.4%
5012868 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.55 34.0 3.95e-01 81.0% 87.5%
5076994 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 34.0 4.15e-01 79.3% 100.0%
5030773 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.55 38.0 4.06e-01 82.8% 81.8%
5005089 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 33.0 4.11e-01 78.7% 100.0%
5030716 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.55 35.0 4.13e-01 81.0% 97.3%
5073398 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 40.0 4.23e-01 83.3% 86.0%
1179385 316.1.1.7 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Pox_polyA_pol 0.55 44.0 4.42e-01 86.2% 84.4%
5039191 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 35.0 4.17e-01 79.3% 100.0%
5008179 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 33.0 4.06e-01 79.3% 100.0%
4226497 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 37.0 3.93e-01 82.2% 77.4%
5073006 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 41.0 4.29e-01 85.6% 85.6%
4499587 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 37.0 3.70e-01 82.8% 66.7%
4106843 316.1.1.43 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 0.54 37.0 3.91e-01 82.8% 79.3%
5043077 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.54 37.0 4.17e-01 82.8% 93.8%
4941248 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 42.0 4.28e-01 81.6% 97.6%
5012092 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 43.0 3.97e-01 84.5% 68.6%
4984735 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 35.0 3.90e-01 82.2% 85.2%
3972591 873.1.1.8 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF5943 0.53 32.0 3.30e-01 74.7% 61.2%
4950299 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.52 30.0 3.72e-01 78.7% 94.0%
5050305 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.52 35.0 3.83e-01 82.2% 85.2%
5041804 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 34.0 3.94e-01 82.8% 92.0%
5032550 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.52 34.0 3.79e-01 82.2% 86.2%
5074409 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 35.0 3.83e-01 82.8% 84.3%
4933190 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.52 30.0 3.14e-01 71.8% 59.4%
4933311 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 35.0 3.73e-01 82.2% 79.3%
4960071 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 32.0 3.83e-01 75.9% 99.0%
4938200 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 37.0 3.82e-01 83.3% 80.0%
4983903 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.51 34.0 3.75e-01 83.3% 85.9%
5014624 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 31.0 3.78e-01 75.9% 100.0%
4998094 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.50 32.0 3.27e-01 76.4% 62.9%
5020627 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.50 32.0 3.56e-01 81.0% 80.7%
D2 medium residues 186-248
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tb6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 40.0 3.15e-01 71.4% 50.7%
3mk7B02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 40.0 3.05e-01 74.6% 87.7%
5ijaA00 3.40.50.1450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like 0.55 46.0 3.57e-01 95.2% 93.9%
3n75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 44.0 3.46e-01 88.9% 84.5%
1h1lD02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 43.0 3.66e-01 92.1% 96.4%
4hwgA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 42.0 3.20e-01 90.5% 79.0%
2avnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 2.81e-01 93.7% 96.0%