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OR473000.1__WNL50949.1__SCREM2_gp30__00030

Bact-Vir

OR473000.1__WNL50949.1__SCREM2_gp30__00030

Identity

Accession:
OR473000 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CREM2

TaxID: 3075959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-147
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09492.17 best Pec_lyase 41.0 2.10e-10 52.4% 25.9%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gxmB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 51.0 3.82e-01 79.6% 72.6%
3t33A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 47.0 3.33e-01 73.5% 50.1%
1r76A00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 55.0 3.90e-01 98.0% 34.1%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 26.0 3.07e-01 93.9% 62.2%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 33.0 3.70e-01 80.3% 77.4%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.54 35.0 3.71e-01 80.3% 72.7%
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 44.0 3.56e-01 89.8% 100.0%
3errA01 1.20.920.60 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.53 40.0 3.57e-01 92.5% 55.3%
7odhL01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.52 45.0 3.12e-01 97.3% 53.5%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 35.0 3.57e-01 77.6% 71.2%
3sqnA02 1.10.1790.40 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.50 35.0 3.88e-01 88.4% 89.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4509 109.2.1.29 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Pec_lyase 0.66 50.0 3.75e-01 76.9% 50.0%
3712784 3187.1.1.0 ↗ alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein 0.53 40.0 3.68e-01 93.2% 60.5%
3583689 3187.1.1.1 ↗ alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › MT 0.53 38.0 3.53e-01 93.2% 58.9%
4077099 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.51 35.0 3.70e-01 70.7% 90.4%
3695911 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 38.0 2.95e-01 78.2% 40.6%
D2 medium residues 148-334
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09492.17 best Pec_lyase 68.1 1.20e-18 74.9% 44.1%
PF09492.17 Pec_lyase 24.0 3.10e-05 29.9% 15.5%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gxmB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.92 90.0 7.14e-01 100.0% 64.2%
1r76A00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.92 90.0 6.78e-01 100.0% 50.8%
1nxcA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.76 63.0 4.58e-01 100.0% 34.7%
3wiwA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.75 63.0 4.95e-01 100.0% 44.2%
3renA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.75 60.0 4.82e-01 100.0% 45.7%
2bb5A01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.75 47.0 3.96e-01 100.0% 39.6%
4v1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.75 60.0 4.76e-01 100.0% 43.5%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 42.0 5.30e-01 94.7% 92.9%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 38.0 4.95e-01 92.5% 87.7%
3eu8A00 1.50.10.140 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) 0.73 66.0 4.91e-01 100.0% 41.7%
3gt5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 63.0 4.83e-01 100.0% 43.5%
1w6jA02 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 64.0 4.91e-01 100.0% 45.7%
3vw5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.71 65.0 4.99e-01 100.0% 46.0%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 42.0 5.27e-01 94.7% 94.7%
1fp3A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.71 61.0 4.67e-01 100.0% 42.0%
4q88A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.71 61.0 4.89e-01 100.0% 48.6%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 39.0 5.06e-01 94.7% 94.4%
2pn5A09 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.70 56.0 4.78e-01 98.4% 53.3%
5czlA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.70 62.0 5.09e-01 100.0% 54.9%
3h7lB02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.69 64.0 4.71e-01 100.0% 45.9%
3a0oA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.69 49.0 3.89e-01 98.4% 37.0%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 42.0 4.87e-01 93.6% 82.7%
1is9A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 61.0 4.82e-01 100.0% 48.9%
5h41A01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 64.0 4.83e-01 100.0% 47.8%
1v5dA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 63.0 5.03e-01 100.0% 51.5%
4ce7B00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 59.0 4.68e-01 100.0% 48.6%
2cqsA04 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 64.0 4.93e-01 100.0% 53.7%
1v7wA03 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 63.0 4.89e-01 100.0% 48.3%
8h1kA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.67 63.0 4.79e-01 100.0% 47.7%
3pmmA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.67 64.0 4.94e-01 100.0% 60.4%
1fbwA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 62.0 4.68e-01 100.0% 49.6%
1dl2A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 62.0 4.44e-01 100.0% 43.1%
1h12A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 62.0 4.73e-01 100.0% 47.5%
3qavA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 40.0 4.58e-01 94.7% 80.0%
3k11A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 62.0 4.61e-01 100.0% 51.7%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.65 29.0 4.40e-01 74.9% 100.0%
1rq5A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 60.0 4.32e-01 100.0% 48.8%
3x17A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 60.0 4.45e-01 100.0% 48.0%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 28.0 3.22e-01 96.3% 53.7%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.63 59.0 4.41e-01 100.0% 48.7%
3sl9B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 37.0 3.93e-01 100.0% 65.5%
4j5tA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 56.0 4.15e-01 100.0% 48.3%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 36.0 4.27e-01 98.9% 86.6%
8d0vA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 53.0 4.08e-01 97.9% 47.1%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 42.0 4.12e-01 100.0% 72.9%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 4.29e-01 97.3% 90.3%
5ux2B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 3.67e-01 73.8% 92.1%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 30.0 3.72e-01 100.0% 94.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4509 109.2.1.29 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Pec_lyase 0.92 90.0 7.21e-01 100.0% 65.7%
4510 109.2.1.29 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Pec_lyase 0.92 90.0 6.78e-01 100.0% 50.8%
4282207 109.2.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim 0.80 65.0 5.04e-01 100.0% 41.6%
2330593 109.2.1.30 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glycoamylase 0.77 67.0 5.01e-01 100.0% 40.2%
3871054 109.2.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_47 0.76 63.0 4.56e-01 100.0% 33.8%
5006157 109.2.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim 0.75 60.0 4.58e-01 100.0% 39.0%
3001839 109.2.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.74 55.0 4.43e-01 100.0% 42.3%
5002312 109.2.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 0.73 61.0 4.57e-01 100.0% 39.5%
None — 0.72 64.0 4.70e-01 100.0% 39.8%
None — 0.72 64.0 4.69e-01 100.0% 39.9%
4552264 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.72 64.0 4.71e-01 100.0% 39.3%
4674127 109.2.1.76 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C, SQHop_cyclase_N 0.72 63.0 4.10e-01 100.0% 23.7%
1717021 109.2.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 0.72 67.0 4.88e-01 100.0% 45.5%
3751220 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.72 64.0 4.66e-01 100.0% 38.8%
3703729 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.71 62.0 4.28e-01 100.0% 31.3%
3782890 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.71 65.0 4.77e-01 100.0% 40.4%
3109778 109.2.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim 0.71 65.0 4.96e-01 100.0% 45.5%
None — 0.71 59.0 4.73e-01 100.0% 47.2%
2085345 109.2.1.23 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_88 0.71 62.0 4.90e-01 100.0% 48.0%
None — 0.71 64.0 4.84e-01 100.0% 44.1%
4352634 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.71 64.0 4.58e-01 100.0% 36.6%
None — 0.71 63.0 4.58e-01 100.0% 37.4%
2469860 109.2.1.60 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SGL_GH162 0.71 67.0 4.79e-01 100.0% 42.1%
None — 0.71 63.0 4.56e-01 100.0% 36.6%
3929523 109.2.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › DUF608 0.71 61.0 4.50e-01 100.0% 37.4%
3598963 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.70 61.0 4.17e-01 100.0% 29.1%
3631029 109.2.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_47 0.68 62.0 4.35e-01 97.3% 56.0%
5081031 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.68 53.0 4.48e-01 100.0% 51.7%
4022250 109.2.1.36 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_36 0.67 63.0 4.75e-01 100.0% 45.5%
3682164 109.2.1.77 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans, SQHop_cyclase_C, SQHop_cyclase_N 0.67 64.0 4.24e-01 100.0% 29.2%
3677223 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.67 63.0 5.06e-01 100.0% 75.6%
4940770 109.2.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GDE_C 0.66 62.0 4.87e-01 98.9% 61.9%
5021358 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.66 63.0 4.42e-01 100.0% 48.9%
3657854 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.66 63.0 4.93e-01 100.0% 52.6%
2099577 109.2.1.36 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_36 0.66 62.0 4.53e-01 100.0% 48.2%
4927695 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.66 63.0 4.42e-01 100.0% 48.6%
3743034 109.2.1.13 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_76 0.66 58.0 4.45e-01 100.0% 43.5%
3611728 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 52.0 4.36e-01 100.0% 50.0%
4987741 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.65 59.0 4.95e-01 96.8% 64.3%
3780957 109.2.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › C5-epim_C 0.65 59.0 4.65e-01 100.0% 49.2%
3644287 109.2.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.65 56.0 5.14e-01 99.5% 71.2%
2330553 109.2.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 0.64 61.0 4.42e-01 100.0% 47.9%
1292102 109.2.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 0.63 59.0 4.40e-01 100.0% 48.3%
1806534 109.2.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_63 0.62 58.0 4.17e-01 100.0% 39.8%
3580282 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 39.0 4.76e-01 83.4% 99.2%
3180668 109.4.1.3548 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_26 0.60 35.0 3.67e-01 100.0% 60.6%
3639316 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 40.0 3.86e-01 100.0% 59.0%
3993403 616.1.1.26 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › NPP-6_helical 0.53 38.0 4.14e-01 72.2% 97.5%
3269328 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 47.0 3.66e-01 100.0% 57.7%
3551260 109.4.1.906 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › N-HEAT_ATR 0.51 44.0 3.70e-01 100.0% 55.8%
3310955 630.1.1.1 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.50 34.0 4.02e-01 72.7% 98.5%