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OR473000.1__WNL50971.1__SCREM2_gp52__00052

Bact-Vir

OR473000.1__WNL50971.1__SCREM2_gp52__00052

Identity

Accession:
OR473000 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CREM2

TaxID: 3075959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-47
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5undA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 42.0 4.05e-01 70.5% 53.7%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 42.0 4.03e-01 72.7% 100.0%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.61 49.0 4.68e-01 90.9% 92.5%
2yt5A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 40.0 3.61e-01 70.5% 72.7%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 39.0 2.94e-01 72.7% 42.3%
5z8nA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 38.0 3.81e-01 77.3% 87.5%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 37.0 3.17e-01 70.5% 57.1%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 39.0 3.45e-01 86.4% 84.6%
4hjwA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 42.0 2.55e-01 97.7% 84.0%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 37.0 3.18e-01 77.3% 71.6%
5tabA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 36.0 3.42e-01 77.3% 73.6%
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 33.0 2.26e-01 70.5% 46.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928124 386.1.1.244 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-met 0.71 47.0 3.88e-01 70.5% 52.9%
3471613 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.68 45.0 4.61e-01 72.7% 75.0%
3527479 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 45.0 4.84e-01 75.0% 88.6%
3247653 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 46.0 4.85e-01 75.0% 94.3%
3597492 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 47.0 4.54e-01 77.3% 86.0%
3373351 386.1.1.76 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met2 0.66 46.0 4.62e-01 75.0% 73.3%
3470997 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 48.0 4.49e-01 79.5% 89.1%
3398989 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.65 46.0 3.65e-01 77.3% 50.5%
3843296 386.1.1.112 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.64 43.0 4.05e-01 70.5% 56.4%
3743358 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 49.0 4.44e-01 84.1% 76.7%
3395132 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 42.0 4.40e-01 70.5% 75.0%
1178570 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 45.0 4.35e-01 86.4% 64.2%
3570260 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 43.0 4.01e-01 75.0% 53.3%
3913341 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 42.0 4.20e-01 70.5% 66.7%
3843654 386.1.1.112 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.63 41.0 3.99e-01 72.7% 60.0%
3809781 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 48.0 3.96e-01 84.1% 54.4%
3616970 386.1.1.68 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › NOA36 0.63 43.0 4.44e-01 75.0% 80.0%
3348295 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 40.0 4.37e-01 70.5% 96.7%
3767044 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 40.0 4.06e-01 70.5% 66.7%
3226960 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 40.0 4.29e-01 70.5% 82.9%
3780096 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 42.0 3.78e-01 72.7% 50.8%
3710951 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 43.0 3.41e-01 77.3% 78.0%
3645751 633.26.1.0 ↗ alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain 0.61 45.0 3.19e-01 81.8% 83.4%
3363358 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 42.0 4.09e-01 72.7% 88.0%
3483069 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 41.0 4.09e-01 70.5% 68.9%
3923634 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 40.0 4.16e-01 75.0% 75.0%
3411708 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 40.0 3.64e-01 75.0% 47.7%
4976747 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.60 42.0 2.66e-01 79.5% 23.1%
None — 0.60 45.0 4.13e-01 84.1% 75.0%
3542896 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.59 45.0 3.67e-01 86.4% 72.2%
3825851 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 41.0 3.60e-01 75.0% 80.0%
3924499 386.1.1.308 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zn_ribbon_IFT122_C 0.59 43.0 4.03e-01 72.7% 63.6%
3995077 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 41.0 3.77e-01 75.0% 88.3%
3685231 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 40.0 3.70e-01 70.5% 81.7%
3790267 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 45.0 3.87e-01 86.4% 86.7%
4999356 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 43.0 3.80e-01 84.1% 80.0%
5071881 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 41.0 3.85e-01 79.5% 61.7%
4943171 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 40.0 4.04e-01 75.0% 75.6%
5065494 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 43.0 4.16e-01 81.8% 76.0%
None — 0.56 43.0 3.85e-01 86.4% 89.2%
3737762 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 42.0 2.63e-01 84.1% 45.9%
4016528 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 46.0 3.82e-01 100.0% 88.2%
3840903 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.55 37.0 2.96e-01 72.7% 37.0%
4268554 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.54 40.0 3.35e-01 79.5% 81.2%
3221156 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 39.0 3.72e-01 84.1% 78.2%
3268164 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 36.0 3.47e-01 79.5% 83.6%
D2 high residues 53-99
PDB
Domain cluster: rep: MW015081.1__QPX48021.1__X__00056__D2-44