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OR473000.1__WNL51033.1__SCREM2_gp114__00114

Bact-Vir

OR473000.1__WNL51033.1__SCREM2_gp114__00114

Identity

Accession:
OR473000 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CREM2

TaxID: 3075959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 230-274
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 52.0 3.73e-01 82.2% 40.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.15e-01 71.1% 72.6%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 41.0 3.66e-01 93.3% 43.5%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.67 44.0 2.68e-01 93.3% 10.2%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 55.0 3.19e-01 100.0% 52.9%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 54.0 3.28e-01 100.0% 46.7%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 46.0 3.51e-01 80.0% 34.0%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 51.0 3.17e-01 100.0% 42.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 43.0 3.27e-01 82.2% 29.7%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 52.0 3.34e-01 95.6% 29.5%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 50.0 3.51e-01 95.6% 54.5%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 47.0 3.59e-01 91.1% 86.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.18e-01 93.3% 64.8%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 47.0 3.11e-01 95.6% 43.4%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 50.0 3.00e-01 97.8% 67.0%
3vcxA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 39.0 3.78e-01 71.1% 60.4%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.09e-01 93.3% 63.9%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 41.0 2.42e-01 80.0% 7.6%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 36.0 2.69e-01 77.8% 24.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.34e-01 100.0% 95.4%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 2.85e-01 100.0% 35.2%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.56 37.0 3.64e-01 73.3% 62.5%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.55 45.0 3.10e-01 95.6% 31.6%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 2.87e-01 77.8% 38.3%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 43.0 3.93e-01 95.6% 87.0%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 2.89e-01 95.6% 24.7%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 48.0 2.69e-01 100.0% 12.2%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 2.87e-01 93.3% 28.6%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.76e-01 100.0% 86.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 35.0 3.34e-01 77.8% 53.6%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.53 42.0 2.97e-01 91.1% 48.1%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 2.77e-01 91.1% 25.4%
1owbA01 2.20.28.60 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 35.0 3.51e-01 71.1% 63.3%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 42.0 2.72e-01 93.3% 23.5%
4zpjA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 2.88e-01 100.0% 73.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 3.65e-01 95.6% 75.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960877 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.80 54.0 4.64e-01 71.1% 50.0%
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.79 51.0 4.94e-01 93.3% 60.0%
3212139 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.76 47.0 4.94e-01 71.1% 71.8%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.74 50.0 3.86e-01 71.1% 45.0%
3477683 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.71 58.0 3.44e-01 88.9% 87.5%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.69 47.0 3.58e-01 71.1% 42.9%
5043752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 46.0 2.88e-01 75.6% 13.1%
3287619 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.68 55.0 3.27e-01 100.0% 12.5%
3231089 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 41.0 4.25e-01 71.1% 67.5%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 50.0 4.60e-01 86.7% 85.7%
4026342 247.1.1.31 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 0.65 49.0 2.72e-01 84.4% 9.5%
4012524 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 47.0 2.77e-01 80.0% 17.3%
1389463 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.63 43.0 4.46e-01 77.8% 78.6%
3480636 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 56.0 3.13e-01 100.0% 98.4%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.63e-01 95.6% 70.8%
3634325 5.1.4.244 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.61 56.0 3.33e-01 100.0% 70.5%
4929797 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 43.0 3.97e-01 95.6% 57.6%
3979962 9.1.1.69 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N 0.61 49.0 4.09e-01 95.6% 51.8%
3701780 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 2.91e-01 82.2% 24.6%
5001728 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.58 46.0 2.85e-01 100.0% 13.8%
5004807 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 48.0 2.88e-01 97.8% 21.0%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.57 38.0 3.76e-01 77.8% 62.0%
4654713 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 49.0 3.43e-01 100.0% 39.3%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.08e-01 93.3% 70.8%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 3.58e-01 95.6% 60.0%
6316 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 41.0 2.89e-01 95.6% 24.7%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.53 38.0 3.56e-01 82.2% 72.1%
3443163 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.52 43.0 3.37e-01 95.6% 41.9%
2526314 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.51 35.0 2.88e-01 73.3% 40.2%
D2 medium residues 13-73
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 34.0 2.29e-01 77.0% 13.6%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 48.0 3.87e-01 96.7% 56.6%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 40.0 3.43e-01 73.8% 50.5%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.54 38.0 2.71e-01 100.0% 23.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.65e-01 86.9% 53.5%
4kv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 35.0 2.68e-01 73.8% 84.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2570782 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.71 37.0 3.65e-01 80.3% 46.3%
5031480 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.51 40.0 2.82e-01 96.7% 76.1%
3789517 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 37.0 2.35e-01 82.0% 93.8%
3999150 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.51 41.0 3.36e-01 93.4% 59.2%
3603043 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.51 37.0 3.25e-01 82.0% 51.6%