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OR473000.1__WNL51034.1__SCREM2_gp115__00115
Bact-VirOR473000.1__WNL51034.1__SCREM2_gp115__00115
Identity
- Accession:
- OR473000 ↗
- Kingdom:
- phage
Quality
67.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-CREM2
TaxID: 3075959
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 699-794
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l3sA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.63 | 47.0 | 3.79e-01 | 79.2% | 94.4% |
| 6hbeA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 47.0 | 4.31e-01 | 85.4% | 83.5% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 27.0 | 3.31e-01 | 91.7% | 69.6% |
| 3qmjA00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 44.0 | 3.50e-01 | 87.5% | 77.7% |
| 3o4oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.13e-01 | 89.6% | 50.0% |
| 4x83A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.37e-01 | 86.5% | 66.7% |
| 3vl9B00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 42.0 | 3.33e-01 | 89.6% | 81.0% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 36.0 | 3.37e-01 | 83.3% | 54.8% |
| 1olrA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 42.0 | 3.30e-01 | 89.6% | 82.1% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 32.0 | 3.81e-01 | 86.5% | 100.0% |
| 5fm5P00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.61e-01 | 87.5% | 71.4% |
| 1srqC02 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.51 | 40.0 | 3.37e-01 | 90.6% | 96.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028349 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.59 | 49.0 | 4.56e-01 | 92.7% | 70.8% |
| 4931880 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 39.0 | 4.39e-01 | 79.2% | 97.1% |
| 5056110 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.56 | 49.0 | 4.35e-01 | 94.8% | 72.6% |
| 4940715 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 46.0 | 4.45e-01 | 91.7% | 87.3% |
| 4021333 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 50.0 | 3.48e-01 | 100.0% | 48.0% |
| None | — | 0.53 | 49.0 | 4.08e-01 | 100.0% | 81.2% | |
| 3201338 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 48.0 | 3.62e-01 | 100.0% | 53.6% |
| 3385678 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.51 | 46.0 | 3.57e-01 | 100.0% | 64.2% |
| None | — | 0.51 | 46.0 | 3.52e-01 | 100.0% | 54.9% | |
| 3709905 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 40.0 | 3.74e-01 | 86.5% | 76.7% |
| 4975253 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 39.0 | 4.11e-01 | 100.0% | 95.3% |
D2
medium
residues 1-82
D3
medium
residues 83-145
Domain cluster:
rep: OR473000.1__WNL51045.1__SCREM2_gp126__00126__D13-73
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 54.0 | 4.16e-01 | 93.7% | 57.8% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 45.0 | 3.78e-01 | 73.0% | 50.9% |
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 37.0 | 3.90e-01 | 71.4% | 62.5% |
| 4joiC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 41.0 | 3.46e-01 | 71.4% | 76.3% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 40.0 | 3.44e-01 | 71.4% | 67.6% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 49.0 | 4.03e-01 | 93.7% | 73.9% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 51.0 | 3.00e-01 | 100.0% | 19.5% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 48.0 | 3.49e-01 | 98.4% | 42.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.78 | 48.0 | 5.88e-01 | 71.4% | 100.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.75 | 52.0 | 5.97e-01 | 73.0% | 100.0% |
| 4177188 | 3312.1.1.0 ↗ | a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease | 0.68 | 46.0 | 4.38e-01 | 71.4% | 72.0% |
| 3995595 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.64 | 44.0 | 3.54e-01 | 73.0% | 45.9% |
| 119401 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.64 | 36.0 | 3.70e-01 | 71.4% | 56.5% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.62 | 53.0 | 3.55e-01 | 100.0% | 33.2% |
| 5046549 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.61 | 37.0 | 3.42e-01 | 71.4% | 46.3% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.61 | 55.0 | 3.27e-01 | 100.0% | 29.2% |
| 3906671 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 37.0 | 4.43e-01 | 84.1% | 97.5% |
| 4468720 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.59 | 40.0 | 3.83e-01 | 84.1% | 60.3% |
| 1487323 | 79.1.1.4 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail | 0.59 | 51.0 | 4.19e-01 | 100.0% | 88.3% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 46.0 | 3.88e-01 | 92.1% | 58.3% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.56 | 38.0 | 2.80e-01 | 73.0% | 76.3% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 45.0 | 3.80e-01 | 96.8% | 70.0% |
| 4948187 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.53 | 37.0 | 3.34e-01 | 74.6% | 58.9% |
| 3498477 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 43.0 | 2.78e-01 | 100.0% | 51.9% |
| 3205169 | 5.1.4.172 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 | 0.51 | 38.0 | 2.45e-01 | 87.3% | 68.7% |
| 4932907 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.51 | 35.0 | 2.33e-01 | 73.0% | 49.6% |
| 3468885 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.51 | 33.0 | 3.14e-01 | 88.9% | 53.8% |
D4
medium
residues 541-601
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2egtA01 | 6.20.50.50 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 31.0 | 3.67e-01 | 72.1% | 100.0% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 48.0 | 3.04e-01 | 96.7% | 34.0% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.51 | 41.0 | 3.06e-01 | 86.9% | 50.6% |
| 3sucA02 | 2.160.10.20 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Insect antifreeze protein | 0.51 | 45.0 | 3.48e-01 | 100.0% | 83.6% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.50 | 32.0 | 3.04e-01 | 80.3% | 51.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3912902 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.58 | 36.0 | 3.27e-01 | 80.3% | 44.7% |
| 3908580 | 391.1.2.17 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC, VWC2L_2nd | 0.56 | 34.0 | 2.62e-01 | 86.9% | 23.2% |
| 3858171 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.56 | 47.0 | 3.22e-01 | 100.0% | 33.5% |
| 3791485 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.56 | 47.0 | 3.19e-01 | 100.0% | 32.9% |
| 3886813 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.55 | 36.0 | 3.31e-01 | 80.3% | 49.4% |
| 3509403 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.54 | 46.0 | 3.12e-01 | 100.0% | 31.4% |
| 3587138 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.53 | 41.0 | 2.69e-01 | 85.2% | 34.2% |
| 3773523 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.52 | 37.0 | 2.76e-01 | 80.3% | 29.7% |
| 4994417 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.50 | 37.0 | 3.10e-01 | 85.2% | 74.4% |