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OR473000.1__WNL51036.1__SCREM2_gp117__00117

Bact-Vir

OR473000.1__WNL51036.1__SCREM2_gp117__00117

Identity

Accession:
OR473000 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CREM2

TaxID: 3075959

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-136
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16778.11 best Phage_tail_APC 40.8 2.30e-10 79.2% 71.7%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 78.0 5.20e-01 100.0% 46.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 76.0 6.69e-01 100.0% 74.0%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.82 69.0 4.77e-01 96.2% 29.4%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.80 68.0 5.23e-01 94.3% 47.8%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.79 65.0 5.89e-01 92.5% 67.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 68.0 5.39e-01 100.0% 54.5%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.75 52.0 5.47e-01 73.6% 93.3%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.74 65.0 5.79e-01 100.0% 68.8%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 65.0 5.31e-01 100.0% 58.6%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 62.0 5.70e-01 100.0% 79.2%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.73 63.0 5.66e-01 100.0% 75.0%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.72 61.0 5.33e-01 98.1% 65.9%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 59.0 4.47e-01 100.0% 57.2%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 52.0 5.06e-01 100.0% 74.6%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 56.0 4.29e-01 100.0% 39.6%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 54.0 5.01e-01 98.1% 75.3%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 54.0 5.10e-01 98.1% 82.1%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.65 51.0 5.17e-01 86.8% 100.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 50.0 4.39e-01 90.6% 56.6%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.63 52.0 4.75e-01 100.0% 76.3%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.63 50.0 4.02e-01 90.6% 79.8%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 3.97e-01 94.3% 47.3%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.59 44.0 4.34e-01 86.8% 75.4%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.30e-01 90.6% 88.2%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 43.0 2.68e-01 83.0% 18.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488979 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.87 78.0 5.85e-01 100.0% 47.2%
4405928 5086.1.1.196 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.85 77.0 6.97e-01 100.0% 77.1%
4961508 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 76.0 6.70e-01 100.0% 72.0%
3570403 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.84 75.0 5.63e-01 100.0% 44.0%
4465072 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.83 75.0 5.72e-01 100.0% 53.0%
4939264 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.82 72.0 6.61e-01 100.0% 77.1%
2394140 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.81 72.0 4.99e-01 100.0% 34.9%
4572664 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.81 67.0 6.16e-01 92.5% 71.4%
3809898 6006.1.1.0 ↗ extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain 0.80 72.0 6.72e-01 100.0% 95.4%
3838686 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 67.0 6.47e-01 94.3% 85.0%
3599499 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 72.0 5.05e-01 100.0% 34.7%
3962893 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.79 70.0 5.77e-01 100.0% 61.1%
4941675 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.78 67.0 3.91e-01 100.0% 30.7%
4784164 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.78 67.0 6.12e-01 98.1% 80.0%
3969948 611.4.1.2 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C 0.76 67.0 5.01e-01 100.0% 41.5%
3349325 5086.1.1.135 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 0.75 66.0 5.77e-01 100.0% 67.5%
3737296 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.74 62.0 4.79e-01 100.0% 43.8%
3999274 5086.1.1.102 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp 0.72 61.0 5.01e-01 100.0% 61.0%
3350539 192.23.1.6 ↗ alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 0.71 59.0 5.20e-01 100.0% 67.1%
3354385 3755.1.1.22 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › DUF3475 0.71 60.0 4.10e-01 100.0% 26.3%
3937465 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 60.0 4.04e-01 100.0% 24.7%
3778394 4177.1.1.26 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PKK 0.70 62.0 3.79e-01 100.0% 60.3%
4940986 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 62.0 5.09e-01 100.0% 61.1%
3915380 192.5.1.25 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PTHB1_hp 0.69 60.0 5.10e-01 100.0% 58.9%
3470544 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 56.0 4.76e-01 100.0% 69.5%
3214360 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.64 60.0 5.00e-01 100.0% 65.9%
3625492 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 44.0 3.32e-01 77.4% 28.3%
D2 medium residues 2-81
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.51 31.0 3.16e-01 91.3% 62.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982596 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.50 27.0 2.90e-01 83.7% 57.1%
3227803 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.50 26.0 2.88e-01 85.0% 58.5%