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OR473000.1__WNL51045.1__SCREM2_gp126__00126
Bact-VirOR473000.1__WNL51045.1__SCREM2_gp126__00126
Identity
- Accession:
- OR473000 ↗
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-CREM2
TaxID: 3075959
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 194-270
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2417914 | 1083.1.1.0 ↗ | a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units | 0.72 | 63.0 | 5.14e-01 | 100.0% | 73.3% |
| 4888789 | 1083.1.1.1 ↗ | a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › gp12-short_mid | 0.67 | 57.0 | 3.97e-01 | 100.0% | 34.4% |
D2
medium
residues 13-73
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.69 | 48.0 | 5.04e-01 | 86.9% | 81.8% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 41.0 | 2.64e-01 | 83.6% | 58.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.73 | 53.0 | 5.53e-01 | 95.1% | 83.6% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.71 | 49.0 | 3.08e-01 | 72.1% | 14.0% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.69 | 48.0 | 5.02e-01 | 86.9% | 80.4% |
| 4177188 | 3312.1.1.0 ↗ | a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease | 0.56 | 45.0 | 4.22e-01 | 90.2% | 70.7% |
| 3166065 | 2004.1.1.207 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_32 | 0.52 | 35.0 | 2.47e-01 | 72.1% | 83.0% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.51 | 38.0 | 2.45e-01 | 83.6% | 28.0% |
| 5049371 | 11.1.1.575 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6941 | 0.51 | 37.0 | 3.05e-01 | 78.7% | 96.8% |
D3
medium
residues 84-168
Domain cluster:
rep: OR473000.1__WNL51045.1__SCREM2_gp126__00126__D13-73
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.63 | 37.0 | 4.51e-01 | 91.8% | 96.1% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 3.30e-01 | 80.0% | 60.8% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 43.0 | 2.75e-01 | 100.0% | 45.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4236690 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.63 | 35.0 | 3.77e-01 | 84.7% | 62.2% |
| 4978135 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 35.0 | 2.95e-01 | 71.8% | 35.2% |
| 3504860 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 32.0 | 3.46e-01 | 78.8% | 64.3% |
| 3277611 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 31.0 | 3.06e-01 | 83.5% | 53.2% |
| 1487323 | 79.1.1.4 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail | 0.51 | 40.0 | 3.70e-01 | 90.6% | 98.3% |
D4
medium
residues 271-366
Domain cluster:
rep: AY328852.1__AAQ96491.1__X__00024__D88-161
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07484.18 best | Collar | 89.1 | 2.00e-25 | 60.4% | 100.0% |