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OR473000.1__WNL51127.1__SCREM2_gp208__00208
Bact-VirOR473000.1__WNL51127.1__SCREM2_gp208__00208
Identity
- Accession:
- OR473000 ↗
- Kingdom:
- phage
Quality
49.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-CREM2
TaxID: 3075959
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1057-1199
Domain cluster:
rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.83 | 68.0 | 7.36e-01 | 98.6% | 100.0% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.79 | 66.0 | 7.03e-01 | 100.0% | 97.6% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.78 | 63.0 | 6.78e-01 | 98.6% | 97.6% |
| 2k1gA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.76 | 62.0 | 6.58e-01 | 100.0% | 94.6% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.76 | 64.0 | 6.65e-01 | 100.0% | 94.0% |
| 3gt2A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.76 | 64.0 | 6.66e-01 | 100.0% | 93.3% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.74 | 65.0 | 6.45e-01 | 100.0% | 88.5% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 65.0 | 6.20e-01 | 100.0% | 82.6% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 50.0 | 5.23e-01 | 87.4% | 97.7% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 49.0 | 4.96e-01 | 91.6% | 90.8% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 46.0 | 4.27e-01 | 90.9% | 96.8% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 25.0 | 3.58e-01 | 97.9% | 93.9% |
| 2be4A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 32.0 | 3.83e-01 | 90.2% | 98.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2410168 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.83 | 69.0 | 7.23e-01 | 100.0% | 93.2% |
| 3257922 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.83 | 54.0 | 6.61e-01 | 84.6% | 100.0% |
| 4373825 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.82 | 65.0 | 6.97e-01 | 100.0% | 94.4% |
| 3517692 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.81 | 65.0 | 6.96e-01 | 100.0% | 94.4% |
| 4476649 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.81 | 68.0 | 7.07e-01 | 100.0% | 92.6% |
| 3284393 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.80 | 61.0 | 6.40e-01 | 100.0% | 86.8% |
| 3980140 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.79 | 65.0 | 6.73e-01 | 99.3% | 91.1% |
| 4277582 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.75 | 66.0 | 6.86e-01 | 100.0% | 97.8% |
| 182479 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.75 | 65.0 | 5.62e-01 | 100.0% | 62.0% |
| 1263590 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.73 | 65.0 | 6.26e-01 | 100.0% | 83.7% |
| 3963980 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.72 | 66.0 | 6.60e-01 | 100.0% | 95.1% |
| 3975571 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.65 | 60.0 | 5.37e-01 | 97.2% | 78.9% |
| 2444014 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.60 | 53.0 | 5.37e-01 | 100.0% | 95.8% |
| 5030431 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.59 | 53.0 | 4.85e-01 | 100.0% | 87.4% |
| 5035935 | 219.1.1.26 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin | 0.59 | 51.0 | 4.72e-01 | 95.1% | 93.5% |
| 3970579 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.59 | 50.0 | 4.95e-01 | 92.3% | 92.7% |
| 3588655 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 51.0 | 4.73e-01 | 95.8% | 91.9% |
| 3385461 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.58 | 49.0 | 4.95e-01 | 91.6% | 97.9% |
| 2570822 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.58 | 50.0 | 4.98e-01 | 95.1% | 91.0% |
| 5056599 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.56 | 51.0 | 5.09e-01 | 98.6% | 99.3% |
| 5071546 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.56 | 37.0 | 3.84e-01 | 83.2% | 71.1% |
| 3967108 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.56 | 16.0 | 2.83e-01 | 81.8% | 80.0% |
| 3197517 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.52 | 31.0 | 3.45e-01 | 91.6% | 71.2% |
| 3796461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 25.0 | 3.33e-01 | 87.4% | 90.7% |
D2
high
residues 1328-1476
Domain cluster:
rep: BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00075__D114-200_257-347
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00182.25 best | Glyco_hydro_19 | 54.0 | 3.00e-14 | 94.0% | 49.6% |
D3
medium
residues 783-806_834-896