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OR475247.1__WNM64523.1__SEA_MIDNIGHTRAIN_36__00036

Bact-Vir

OR475247.1__WNM64523.1__SEA_MIDNIGHTRAIN_36__00036

Identity

Accession:
OR475247 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-116
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.72 57.0 4.75e-01 97.5% 48.9%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 58.0 4.94e-01 97.5% 55.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 47.0 5.31e-01 88.7% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 52.0 5.57e-01 91.3% 100.0%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.66 48.0 4.59e-01 98.8% 66.7%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 57.0 4.26e-01 100.0% 42.5%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 50.0 4.27e-01 100.0% 50.0%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.65 49.0 4.83e-01 81.2% 100.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 56.0 4.33e-01 100.0% 48.6%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.64 47.0 4.71e-01 78.8% 77.1%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 45.0 4.75e-01 92.5% 83.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 46.0 4.45e-01 98.8% 68.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.59e-01 80.0% 100.0%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.62 46.0 4.83e-01 96.2% 92.8%
2vhfB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 3.56e-01 100.0% 52.4%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 49.0 3.89e-01 95.0% 85.3%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 41.0 3.89e-01 73.8% 87.3%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 51.0 4.11e-01 100.0% 48.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 47.0 3.86e-01 87.5% 87.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.35e-01 76.2% 100.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.17e-01 85.0% 76.9%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 45.0 3.76e-01 87.5% 74.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 48.0 3.95e-01 93.8% 73.1%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 47.0 4.19e-01 93.8% 72.3%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 3.12e-01 80.0% 98.5%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 42.0 3.57e-01 82.5% 98.5%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.80e-01 87.5% 74.8%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.80e-01 97.5% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 47.0 4.79e-01 96.2% 100.0%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 48.0 4.58e-01 98.8% 95.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.54 39.0 3.76e-01 100.0% 65.3%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.96e-01 92.5% 67.0%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.53 38.0 2.83e-01 77.5% 43.2%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 46.0 3.74e-01 100.0% 77.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.55e-01 97.5% 100.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.22e-01 90.0% 97.1%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.25e-01 88.7% 89.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.02e-01 88.7% 85.4%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.75e-01 95.0% 63.4%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.69e-01 83.7% 82.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 3.04e-01 73.8% 72.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.23e-01 80.0% 83.9%
4xxfA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 44.0 3.16e-01 97.5% 59.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 38.0 3.43e-01 88.7% 55.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 43.0 4.27e-01 92.5% 100.0%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 39.0 3.41e-01 86.3% 97.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926817 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.68 61.0 4.75e-01 100.0% 56.8%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 52.0 5.46e-01 96.2% 91.8%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 53.0 5.57e-01 96.2% 97.1%
4584943 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 52.0 5.47e-01 96.2% 95.7%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 5.61e-01 96.2% 95.9%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 52.0 5.44e-01 97.5% 93.2%
3817488 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.66 56.0 5.14e-01 93.8% 99.0%
4084850 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 50.0 5.49e-01 93.8% 100.0%
4205717 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 53.0 5.35e-01 100.0% 88.7%
3702189 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.65 57.0 4.26e-01 100.0% 46.2%
3615154 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.65 57.0 4.39e-01 100.0% 50.0%
3596620 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 56.0 4.30e-01 100.0% 52.8%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 49.0 5.35e-01 93.8% 100.0%
4185009 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 49.0 5.29e-01 95.0% 100.0%
3961475 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.64 54.0 4.16e-01 98.8% 53.5%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 50.0 5.32e-01 96.2% 97.1%
4225787 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 55.0 5.08e-01 98.8% 76.0%
4068333 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 48.0 5.22e-01 92.5% 100.0%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 42.0 4.74e-01 82.5% 100.0%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 47.0 5.02e-01 93.8% 100.0%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.62 44.0 4.82e-01 86.3% 100.0%
3721973 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 47.0 4.86e-01 91.3% 89.3%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.62 44.0 4.81e-01 87.5% 100.0%
4377781 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 53.0 5.36e-01 96.2% 98.8%
5038340 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 48.0 4.93e-01 93.8% 92.0%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 46.0 5.03e-01 100.0% 100.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 46.0 4.35e-01 95.0% 67.4%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.31e-01 95.0% 100.0%
4335951 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 49.0 5.08e-01 96.2% 97.3%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.99e-01 93.8% 100.0%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 44.0 4.77e-01 95.0% 95.4%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.92e-01 92.5% 98.5%
3520312 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.34e-01 87.5% 75.3%
4162968 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 51.0 5.20e-01 96.2% 100.0%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.91e-01 93.8% 98.6%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.59 47.0 4.71e-01 96.2% 86.3%
3512363 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.59 48.0 4.04e-01 92.5% 82.8%
4976962 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.65e-01 95.0% 91.0%
3502388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.24e-01 87.5% 78.7%
3797511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.16e-01 90.0% 68.4%
3886033 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.58 41.0 4.14e-01 86.3% 75.0%
5023750 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.58 50.0 4.38e-01 100.0% 91.2%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.57 47.0 4.67e-01 96.2% 85.9%
3393319 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 43.0 3.93e-01 95.0% 59.1%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.55e-01 97.5% 95.7%
3358748 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.57 47.0 4.74e-01 91.3% 100.0%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.57 49.0 4.90e-01 98.8% 100.0%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 47.0 4.23e-01 96.2% 80.8%
3926175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.08e-01 96.2% 72.9%
3796759 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.57 47.0 4.48e-01 93.8% 77.9%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 42.0 4.07e-01 100.0% 71.1%
5022234 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 40.0 4.13e-01 91.3% 78.2%
3727542 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 3.96e-01 87.5% 68.9%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.75e-01 95.0% 100.0%
3515696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.97e-01 92.5% 87.4%
3986600 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.56 49.0 4.21e-01 100.0% 88.5%
3481770 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.55 43.0 4.32e-01 95.0% 85.0%
3595169 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.57e-01 83.7% 98.6%
3721116 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.83e-01 86.3% 69.4%
3992688 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.55 43.0 3.50e-01 92.5% 42.4%
4017956 109.1.1.35 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.55 40.0 2.80e-01 87.5% 22.5%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.55 46.0 3.12e-01 95.0% 68.1%
4366483 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 48.0 4.71e-01 96.2% 94.1%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 42.0 4.29e-01 86.3% 97.5%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.55 48.0 3.72e-01 100.0% 45.4%
4977702 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.55 40.0 3.97e-01 100.0% 74.1%
4135417 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 43.0 3.20e-01 85.0% 75.1%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 43.0 4.23e-01 87.5% 85.9%
3515143 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.55 43.0 3.76e-01 87.5% 82.4%
3729666 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.97e-01 88.7% 68.2%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 42.0 4.29e-01 86.3% 98.8%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 43.0 4.30e-01 93.8% 89.4%
3762071 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.52e-01 83.7% 68.8%
3576219 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.52 43.0 3.64e-01 93.8% 74.5%
3280029 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 39.0 3.36e-01 81.2% 91.9%
3487003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.86e-01 98.8% 60.0%
3189199 109.1.1.35 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.51 39.0 2.82e-01 87.5% 25.7%