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OR475247.1__WNM64575.1__SEA_MIDNIGHTRAIN_88__00088

Bact-Vir

OR475247.1__WNM64575.1__SEA_MIDNIGHTRAIN_88__00088

Identity

Accession:
OR475247 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 4.81e-01 98.7% 49.3%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 52.0 5.20e-01 87.3% 79.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 57.0 5.83e-01 93.7% 94.7%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 55.0 4.12e-01 91.1% 41.9%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.66 46.0 4.54e-01 84.8% 67.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 58.0 5.60e-01 100.0% 87.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 47.0 4.91e-01 89.9% 84.5%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 53.0 4.10e-01 91.1% 43.5%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.64 45.0 3.61e-01 72.2% 47.0%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.69e-01 75.9% 94.4%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.63 50.0 4.71e-01 88.6% 94.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 48.0 3.74e-01 84.8% 71.5%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 53.0 3.60e-01 100.0% 36.5%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 47.0 3.50e-01 84.8% 97.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 52.0 3.47e-01 100.0% 31.6%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.24e-01 92.4% 94.2%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.77e-01 78.5% 57.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 52.0 4.21e-01 100.0% 53.3%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.27e-01 100.0% 49.0%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 42.0 3.88e-01 86.1% 59.4%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 4.14e-01 84.8% 72.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.15e-01 84.8% 63.9%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 4.15e-01 84.8% 79.1%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.29e-01 100.0% 27.8%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.84e-01 84.8% 75.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 43.0 3.31e-01 86.1% 61.7%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 39.0 2.81e-01 74.7% 30.9%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.55 48.0 3.02e-01 100.0% 24.8%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 3.02e-01 96.2% 90.4%
4ifdF00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 45.0 3.48e-01 100.0% 65.3%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.49e-01 93.7% 80.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.52e-01 89.9% 49.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.36e-01 79.7% 53.3%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 48.0 3.35e-01 100.0% 37.9%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 42.0 3.27e-01 98.7% 39.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.37e-01 72.2% 75.7%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 46.0 3.53e-01 98.7% 57.1%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.07e-01 88.6% 41.6%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.51 42.0 3.16e-01 94.9% 91.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1140833 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.73 57.0 5.98e-01 97.5% 90.4%
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.70 54.0 5.54e-01 89.9% 85.3%
3923143 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.69 47.0 3.29e-01 70.9% 45.4%
5019886 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 52.0 5.35e-01 87.3% 88.0%
4975157 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.67 54.0 4.11e-01 88.6% 41.3%
3496522 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 59.0 3.65e-01 100.0% 27.1%
3387871 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.67 54.0 4.77e-01 88.6% 62.6%
4032029 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 50.0 4.73e-01 79.7% 89.5%
3707278 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 56.0 4.02e-01 93.7% 40.4%
3274216 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.66 49.0 4.10e-01 82.3% 46.7%
5069695 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.65 55.0 5.06e-01 100.0% 82.6%
3783070 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.64 58.0 3.71e-01 100.0% 28.5%
3716765 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 56.0 3.35e-01 97.5% 27.9%
3242479 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.62 40.0 2.73e-01 91.1% 17.9%
5041112 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 49.0 5.11e-01 87.3% 95.7%
3396749 5.1.5.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.62 55.0 3.59e-01 100.0% 27.2%
3786550 5.1.4.219 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.61 54.0 3.37e-01 100.0% 30.5%
4474202 809.1.1.7 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.61 43.0 4.36e-01 86.1% 74.4%
3936589 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 54.0 3.47e-01 100.0% 27.1%
3250795 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.02e-01 92.4% 46.5%
3504193 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.60 45.0 3.85e-01 83.5% 49.2%
3928411 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 31.0 3.17e-01 82.3% 50.7%
3785954 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.60 51.0 3.31e-01 100.0% 29.5%
3602032 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 3.83e-01 98.7% 43.8%
3364229 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 51.0 3.44e-01 97.5% 32.1%
3188402 4099.1.1.31 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.59 51.0 3.85e-01 97.5% 43.5%
3941130 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.59 52.0 3.47e-01 100.0% 29.7%
3592578 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 2.99e-01 86.1% 35.1%
3391005 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.42e-01 100.0% 27.4%
3177452 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.04e-01 100.0% 18.6%
None 0.58 51.0 3.18e-01 100.0% 21.1%
4025360 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.58 51.0 4.15e-01 100.0% 71.6%
3942181 6150.1.1.0 a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.58 42.0 3.91e-01 88.6% 59.0%
3214129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.04e-01 97.5% 55.2%
1879626 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.58 48.0 3.50e-01 91.1% 41.2%
3575356 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.33e-01 100.0% 23.7%
3286007 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.58 51.0 3.59e-01 100.0% 41.2%
3520341 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.58 51.0 4.21e-01 100.0% 72.4%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 37.0 3.42e-01 77.2% 49.5%
3605675 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.17e-01 100.0% 22.3%
3609492 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 49.0 4.13e-01 98.7% 56.4%
3253075 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 45.0 3.94e-01 100.0% 56.7%
None 0.57 49.0 3.27e-01 100.0% 26.0%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.57 35.0 4.08e-01 79.7% 98.0%
3280624 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.57 50.0 3.53e-01 100.0% 41.6%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.20e-01 100.0% 28.5%
3865654 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.55 39.0 3.47e-01 75.9% 76.7%
3399725 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.55 38.0 3.33e-01 98.7% 49.6%
4018795 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.54 39.0 3.38e-01 75.9% 65.3%
3432311 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.54 47.0 3.82e-01 100.0% 91.9%
5028087 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 41.0 3.75e-01 86.1% 70.4%
3615552 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.54 46.0 3.53e-01 97.5% 41.1%
4139128 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.54 38.0 3.39e-01 88.6% 48.8%
3741960 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.53 46.0 3.09e-01 100.0% 28.8%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.53 41.0 3.60e-01 84.8% 75.0%
3598079 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 41.0 3.55e-01 87.3% 70.4%
4011973 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.96e-01 98.7% 42.8%
5014865 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.42e-01 78.5% 55.7%
3475361 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 36.0 3.11e-01 78.5% 44.6%
3269703 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 35.0 3.02e-01 72.2% 60.7%
3574215 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 41.0 3.07e-01 88.6% 48.4%
3777215 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.37e-01 73.4% 78.0%
3913071 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 37.0 3.15e-01 77.2% 69.3%
3285001 210.1.2.0 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.51 44.0 2.95e-01 96.2% 42.1%
3388849 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.43e-01 100.0% 49.7%
3224914 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.50 36.0 3.26e-01 77.2% 69.6%