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OR475247.1__WNM64588.1__SEA_MIDNIGHTRAIN_102__00101

Bact-Vir

OR475247.1__WNM64588.1__SEA_MIDNIGHTRAIN_102__00101

Identity

Accession:
OR475247 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_MidnightRain

TaxID: 3043920

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-100
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.74 65.0 5.86e-01 100.0% 79.5%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.70 60.0 5.51e-01 100.0% 74.1%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.59 49.0 4.27e-01 100.0% 59.4%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.54 38.0 3.55e-01 76.7% 77.8%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.53 44.0 3.65e-01 96.7% 77.4%
4gc1A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 40.0 3.47e-01 86.7% 57.4%
3hp7A01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.51 36.0 3.57e-01 76.7% 72.3%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 42.0 2.68e-01 96.7% 32.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631912 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 53.0 4.30e-01 83.3% 41.6%
5049363 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 54.0 4.81e-01 80.0% 70.6%
3612559 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 53.0 4.14e-01 83.3% 37.6%
3609616 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 52.0 4.24e-01 88.3% 42.1%
3194224 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.70 51.0 4.88e-01 83.3% 67.1%
1002460 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.70 60.0 5.46e-01 100.0% 72.3%
3367616 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 52.0 4.20e-01 88.3% 41.7%
5010476 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 48.0 4.96e-01 76.7% 78.2%
3260871 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 51.0 4.55e-01 88.3% 56.5%
3226103 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 51.0 4.38e-01 88.3% 50.0%
3336718 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.67 57.0 5.02e-01 100.0% 64.7%
4882574 375.1.1.35 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP 0.67 45.0 4.63e-01 71.7% 94.8%
5081423 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.66 51.0 4.78e-01 96.7% 68.9%
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 50.0 5.17e-01 100.0% 89.1%
5045085 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.65 53.0 4.82e-01 100.0% 66.3%
4654276 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.63 53.0 4.38e-01 100.0% 52.4%
4373342 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.62 52.0 4.38e-01 98.3% 67.3%
3700246 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.61 55.0 4.44e-01 100.0% 62.6%
3718306 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.61 50.0 4.06e-01 98.3% 62.3%
3295435 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 49.0 4.61e-01 93.3% 72.0%
3745904 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.60 44.0 4.12e-01 78.3% 62.7%
119292 3149.1.1.1 ↗ a+b complex topology › Hypothetical protein ORF126 › Hypothetical protein ORF126 › Hypothetical protein ORF126 › ORF126-like 0.53 44.0 3.57e-01 96.7% 71.8%
5045553 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 44.0 2.63e-01 98.3% 29.2%
3584026 376.1.6.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, IBR_1 0.51 33.0 2.43e-01 90.0% 25.0%