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OR475254.1__WNM65338.1__SEA_ALYSSAMIRACLE_34__00034

Bact-Vir

OR475254.1__WNM65338.1__SEA_ALYSSAMIRACLE_34__00034

Identity

Accession:
OR475254 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-84
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l8kA00 3.30.1330.220 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha 0.74 47.0 3.78e-01 100.0% 35.0%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 55.0 4.32e-01 89.6% 61.4%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 47.0 4.12e-01 100.0% 51.5%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.64 49.0 3.95e-01 88.1% 42.0%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.64 45.0 4.31e-01 97.0% 63.3%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 41.0 3.10e-01 79.1% 27.6%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.62 46.0 4.26e-01 80.6% 85.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 43.0 3.59e-01 79.1% 89.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.59 39.0 3.10e-01 86.6% 32.8%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.58 42.0 3.38e-01 76.1% 50.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.58 52.0 4.48e-01 100.0% 67.0%
1vdrA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.57 38.0 2.93e-01 100.0% 29.3%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 3.33e-01 80.6% 67.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.50e-01 86.6% 87.8%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.68e-01 100.0% 90.8%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 38.0 3.34e-01 70.1% 81.4%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.69e-01 85.1% 43.3%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 2.87e-01 76.1% 54.8%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 41.0 3.72e-01 100.0% 58.1%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.02e-01 94.0% 98.4%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.86e-01 86.6% 28.8%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.10e-01 97.0% 99.0%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.35e-01 79.1% 87.1%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.54 47.0 4.30e-01 100.0% 92.2%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.49e-01 92.5% 95.9%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.54 46.0 3.82e-01 100.0% 76.7%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.00e-01 80.6% 68.6%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 3.41e-01 98.5% 54.5%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 3.48e-01 100.0% 61.0%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 43.0 3.29e-01 95.5% 89.4%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.47e-01 100.0% 61.5%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 34.0 3.24e-01 70.1% 97.7%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.47e-01 100.0% 63.1%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.32e-01 100.0% 53.6%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.14e-01 92.5% 48.0%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 43.0 3.68e-01 100.0% 96.6%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.48e-01 100.0% 61.7%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 42.0 3.88e-01 89.6% 87.1%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.24e-01 100.0% 53.8%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.42e-01 100.0% 61.3%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.38e-01 100.0% 62.9%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 43.0 4.03e-01 92.5% 88.9%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.21e-01 100.0% 63.5%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.34e-01 100.0% 71.1%
3sojB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.51 43.0 3.70e-01 100.0% 67.0%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 45.0 4.07e-01 100.0% 73.9%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.39e-01 100.0% 61.8%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.38e-01 100.0% 62.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048207 6012.1.1.0 few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI 0.79 50.0 6.06e-01 97.0% 100.0%
4104949 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.75 52.0 4.48e-01 86.6% 46.7%
4033196 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.69 50.0 3.91e-01 76.1% 60.7%
4152363 243.1.1.115 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.66 53.0 4.33e-01 88.1% 88.6%
3172579 5.1.4.128 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rax2 0.66 45.0 2.85e-01 71.6% 27.5%
3520852 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.66 57.0 4.46e-01 100.0% 64.0%
5051220 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 50.0 4.50e-01 100.0% 61.1%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 46.0 4.21e-01 100.0% 56.7%
4241220 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.64 45.0 2.99e-01 74.6% 31.5%
3231582 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 52.0 3.80e-01 91.0% 65.9%
3225056 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.79e-01 76.1% 66.4%
3231960 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.60 42.0 3.00e-01 73.1% 92.7%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 41.0 3.67e-01 100.0% 51.6%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.58 43.0 3.64e-01 77.6% 55.5%
2989727 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.58 43.0 3.70e-01 100.0% 50.0%
5059044 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.91e-01 100.0% 56.8%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 42.0 3.63e-01 100.0% 48.2%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 52.0 4.29e-01 100.0% 73.0%
2121270 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.57 49.0 4.44e-01 100.0% 75.8%
4031786 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.57 46.0 4.32e-01 100.0% 72.9%
3971176 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.56 43.0 3.16e-01 100.0% 31.4%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.56 48.0 3.69e-01 100.0% 40.6%
4234211 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.56 41.0 3.85e-01 80.6% 62.4%
3242625 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 45.0 4.03e-01 98.5% 60.0%
134018 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 45.0 3.41e-01 100.0% 37.0%
3276111 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.55 49.0 4.45e-01 100.0% 83.1%
4929896 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 44.0 4.21e-01 91.0% 88.7%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.67e-01 76.1% 66.7%
3946575 3943.1.1.5 beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N 0.53 36.0 3.23e-01 82.1% 50.5%
70 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 46.0 3.41e-01 98.5% 54.5%
3783714 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 37.0 3.69e-01 98.5% 70.7%
165640 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 45.0 3.43e-01 100.0% 58.1%
4948135 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 46.0 3.36e-01 100.0% 53.7%
4496885 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 45.0 3.33e-01 100.0% 54.2%
5028109 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 42.0 4.11e-01 88.1% 94.7%
5033093 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.82e-01 100.0% 73.0%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 41.0 3.49e-01 98.5% 51.8%
5001009 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.35e-01 98.5% 56.1%
4413783 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 43.0 3.07e-01 98.5% 45.8%
4930864 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.36e-01 100.0% 56.7%
5033350 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.38e-01 100.0% 57.3%
4399539 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 45.0 3.29e-01 100.0% 54.9%
4981490 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 44.0 3.35e-01 100.0% 58.3%
3513184 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 45.0 3.16e-01 100.0% 36.4%
1217791 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 46.0 3.41e-01 100.0% 55.0%
3959626 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 45.0 3.42e-01 100.0% 74.5%
4551218 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 44.0 3.39e-01 100.0% 57.0%
4986653 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 44.0 3.30e-01 100.0% 57.0%
4682440 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 39.0 3.52e-01 98.5% 58.9%
5050764 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 3.57e-01 100.0% 53.9%
4234915 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 45.0 3.80e-01 100.0% 77.4%
4324501 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.51 42.0 3.66e-01 98.5% 92.2%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 43.0 3.90e-01 98.5% 81.1%
4926809 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 43.0 3.39e-01 100.0% 74.4%
4322066 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 43.0 3.31e-01 100.0% 55.9%
4969727 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.50 41.0 3.07e-01 88.1% 62.0%
4974855 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.50 43.0 3.31e-01 100.0% 61.8%
4412962 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.50 40.0 3.41e-01 97.0% 52.2%
4395520 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.50 36.0 3.31e-01 98.5% 55.8%