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OR475255.1__WNM65465.1__SEA_PHONEGINGI_63__00062

Bact-Vir

OR475255.1__WNM65465.1__SEA_PHONEGINGI_63__00062

Identity

Accession:
OR475255 ↗
Kingdom:
phage

Quality

59.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Appavirus› Microbacterium_phage_Phonegingi

TaxID: 3043926

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: rep: ON045087.1__UPU15914.1__X__00088__D84-142
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 55.0 4.48e-01 83.9% 100.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.69 58.0 5.30e-01 92.9% 79.5%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 45.0 5.09e-01 73.2% 100.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 47.0 3.65e-01 76.8% 81.7%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 52.0 4.20e-01 87.5% 86.4%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.64 45.0 4.93e-01 75.0% 100.0%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 50.0 5.02e-01 100.0% 84.7%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.64 45.0 4.35e-01 76.8% 87.9%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 49.0 3.96e-01 87.5% 99.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.63 52.0 4.72e-01 91.1% 93.4%
3tqqA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.63 46.0 3.78e-01 78.6% 85.8%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 54.0 4.60e-01 100.0% 72.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 53.0 4.57e-01 100.0% 74.4%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 46.0 3.44e-01 85.7% 82.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 45.0 3.79e-01 80.4% 81.1%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.40e-01 98.2% 66.4%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.60 46.0 3.80e-01 91.1% 73.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 51.0 4.82e-01 100.0% 95.8%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 50.0 3.58e-01 100.0% 96.7%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 3.91e-01 94.6% 71.4%
1tl2A00 2.115.10.10 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Tachylectin 2 0.58 41.0 2.78e-01 78.6% 81.7%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.56 39.0 3.35e-01 73.2% 65.9%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 41.0 2.47e-01 78.6% 93.5%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.55 45.0 3.33e-01 98.2% 53.0%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 46.0 4.22e-01 98.2% 100.0%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 40.0 2.47e-01 80.4% 41.0%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.53 44.0 3.85e-01 100.0% 81.9%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.28e-01 91.1% 96.2%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.15e-01 78.6% 83.0%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.53e-01 91.1% 90.7%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.52 40.0 2.74e-01 83.9% 36.1%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.52 37.0 2.79e-01 96.4% 29.3%
4p72A03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.52 41.0 2.91e-01 94.6% 25.6%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.36e-01 100.0% 54.5%
4k47A00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.51 42.0 2.95e-01 91.1% 87.4%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.51 35.0 3.40e-01 73.2% 78.8%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 43.0 3.26e-01 100.0% 79.3%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.92e-01 100.0% 78.0%
2rhqB03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.50 41.0 2.86e-01 94.6% 25.7%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.04e-01 78.6% 83.0%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.50 42.0 3.90e-01 100.0% 78.4%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.50 38.0 2.75e-01 92.9% 98.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.49e-01 80.4% 96.4%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.36e-01 92.9% 88.6%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.40e-01 91.1% 95.0%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.58e-01 91.1% 100.0%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 55.0 5.14e-01 92.9% 87.1%
4929001 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.59e-01 78.6% 92.3%
3409554 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 49.0 4.17e-01 80.4% 97.9%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 53.0 5.10e-01 92.9% 93.8%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 50.0 5.28e-01 83.9% 96.0%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 53.0 5.00e-01 94.6% 88.6%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.57e-01 87.5% 97.3%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.60e-01 89.3% 98.7%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 56.0 4.77e-01 100.0% 75.6%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 55.0 4.68e-01 100.0% 73.7%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 55.0 4.67e-01 100.0% 69.5%
166755 5.1.3.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 0.63 46.0 2.70e-01 78.6% 13.8%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 55.0 5.13e-01 100.0% 97.1%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 4.58e-01 100.0% 70.8%
4281020 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 55.0 4.62e-01 100.0% 69.5%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 5.06e-01 100.0% 97.1%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 55.0 5.12e-01 100.0% 94.3%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 47.0 4.58e-01 87.5% 89.2%
4184958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 4.73e-01 100.0% 78.8%
2814716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 4.59e-01 100.0% 70.5%
4966956 1.1.15.2 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC 0.62 54.0 4.01e-01 98.2% 99.3%
4047241 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 53.0 4.54e-01 100.0% 71.6%
3648952 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.61 53.0 4.33e-01 98.2% 80.0%
4163711 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 53.0 4.65e-01 98.2% 76.5%
5046975 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.61 53.0 4.78e-01 100.0% 91.3%
4407497 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 5.01e-01 98.2% 100.0%
4512995 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 4.92e-01 100.0% 95.7%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 51.0 4.91e-01 98.2% 100.0%
4087314 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 52.0 4.65e-01 100.0% 82.5%
4950368 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 43.0 3.20e-01 78.6% 76.8%
4580145 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.59 49.0 4.34e-01 94.6% 76.5%
3626593 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 42.0 2.89e-01 78.6% 66.4%
4957565 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 42.0 3.38e-01 80.4% 64.8%
1384885 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.57 41.0 3.68e-01 80.4% 86.4%
4344755 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.57 44.0 3.60e-01 100.0% 45.7%
3479602 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 40.0 2.79e-01 78.6% 69.5%
3471720 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.55 40.0 2.86e-01 80.4% 50.0%
3596181 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 40.0 2.76e-01 80.4% 64.4%
1291570 101.1.2.179 ↗ alpha arrays › HTH › HTH › winged helix domain › ROXA-like_wH 0.55 47.0 3.90e-01 100.0% 84.1%
3518485 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.55 39.0 2.77e-01 78.6% 69.2%
4452193 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.55 39.0 2.76e-01 80.4% 81.8%
4278105 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.54 38.0 2.65e-01 78.6% 58.6%
3896178 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 38.0 2.80e-01 78.6% 65.5%
3479508 356.1.1.0 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors 0.53 46.0 4.44e-01 98.2% 95.4%
4565117 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.51 41.0 2.85e-01 91.1% 25.7%
D2 high residues 135-243
PDB
D3 medium residues 68-130
PDB