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OR475265.1__WNM66366.1__SEA_CULVER_96__00088

Bact-Vir

OR475265.1__WNM66366.1__SEA_CULVER_96__00088

Identity

Accession:
OR475265 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 53.0 5.80e-01 78.6% 86.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.73 64.0 5.15e-01 95.7% 57.3%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 65.0 5.52e-01 100.0% 77.2%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 51.0 4.62e-01 100.0% 59.1%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.69 59.0 4.37e-01 94.3% 47.1%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 61.0 5.54e-01 100.0% 76.1%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 58.0 5.07e-01 100.0% 74.5%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 59.0 5.10e-01 100.0% 71.6%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 52.0 5.11e-01 100.0% 80.0%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 57.0 4.63e-01 100.0% 73.8%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 59.0 5.24e-01 100.0% 81.4%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 53.0 4.88e-01 100.0% 68.8%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 55.0 4.60e-01 100.0% 75.2%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 56.0 5.27e-01 100.0% 90.7%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 55.0 4.33e-01 100.0% 48.7%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 54.0 4.87e-01 100.0% 75.8%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 46.0 4.24e-01 84.3% 100.0%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 55.0 4.58e-01 100.0% 84.7%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 52.0 4.81e-01 97.1% 71.7%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 4.45e-01 97.1% 58.5%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.62 53.0 4.88e-01 97.1% 80.2%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.61 51.0 5.14e-01 100.0% 97.1%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.61 54.0 5.10e-01 100.0% 84.9%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 4.43e-01 87.1% 96.7%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 4.82e-01 94.3% 77.6%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.61 51.0 5.18e-01 100.0% 95.7%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 53.0 4.81e-01 100.0% 76.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 44.0 4.30e-01 100.0% 71.1%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 52.0 4.89e-01 98.6% 80.5%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.53e-01 100.0% 81.1%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.60 47.0 4.85e-01 98.6% 95.5%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 53.0 4.82e-01 100.0% 77.4%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.74e-01 98.6% 77.2%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.49e-01 97.1% 68.9%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.70e-01 100.0% 76.3%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 50.0 4.99e-01 100.0% 95.8%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.59e-01 100.0% 72.1%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 51.0 4.37e-01 98.6% 78.0%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 43.0 4.42e-01 95.7% 83.3%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 52.0 5.05e-01 100.0% 93.6%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 44.0 3.92e-01 85.7% 83.9%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 50.0 4.79e-01 100.0% 85.7%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 46.0 4.51e-01 90.0% 97.5%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 50.0 4.60e-01 100.0% 75.8%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 50.0 4.67e-01 100.0% 79.3%
5macE01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.57 45.0 3.56e-01 84.3% 51.8%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 35.0 2.11e-01 100.0% 8.1%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 4.14e-01 87.1% 96.3%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 48.0 3.60e-01 100.0% 49.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 47.0 4.19e-01 100.0% 72.6%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 45.0 4.03e-01 98.6% 67.6%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 45.0 3.94e-01 97.1% 88.7%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.55 42.0 3.05e-01 84.3% 30.4%
5hatA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.54 43.0 3.49e-01 85.7% 58.6%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.53e-01 85.7% 78.2%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.40e-01 100.0% 92.0%
3h09A04 4.10.1240.40 Few Secondary Structures › Irregular › Hormone receptor fold › 0.53 41.0 4.10e-01 85.7% 97.2%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.66e-01 95.7% 66.1%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.17e-01 82.9% 52.2%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 41.0 3.04e-01 92.9% 52.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603182 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 57.0 5.43e-01 84.3% 70.0%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 56.0 5.49e-01 100.0% 76.0%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 56.0 5.04e-01 100.0% 60.0%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 57.0 5.57e-01 100.0% 78.7%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.71 59.0 5.09e-01 88.6% 66.7%
4966449 1.1.13.72 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.71 63.0 5.72e-01 100.0% 84.2%
5024264 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.71 53.0 5.24e-01 82.9% 74.7%
3257888 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.70 48.0 3.75e-01 71.4% 91.3%
3972102 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 5.54e-01 98.6% 94.0%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 5.89e-01 98.6% 91.8%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.70 55.0 5.31e-01 95.7% 75.0%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 58.0 5.06e-01 88.6% 64.0%
3386972 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.69 57.0 5.79e-01 100.0% 91.4%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.69 60.0 5.30e-01 98.6% 67.0%
3966494 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 62.0 5.32e-01 100.0% 70.9%
4929759 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 60.0 4.59e-01 97.1% 96.2%
5028788 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.68 46.0 3.66e-01 70.0% 89.3%
5017260 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 57.0 4.59e-01 95.7% 95.6%
5038531 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.66 49.0 5.11e-01 80.0% 100.0%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 58.0 5.39e-01 100.0% 84.4%
3842233 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.66 57.0 5.29e-01 98.6% 75.6%
4973665 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 55.0 5.22e-01 95.7% 78.8%
4172288 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.64 56.0 5.15e-01 97.1% 81.1%
4452870 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 52.0 4.90e-01 95.7% 72.2%
4087903 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.93e-01 95.7% 72.2%
4149342 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 53.0 5.36e-01 100.0% 95.7%
4222919 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.64 57.0 4.70e-01 100.0% 63.2%
3574784 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 57.0 4.89e-01 100.0% 65.5%
4632972 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.63 54.0 5.49e-01 100.0% 98.5%
4995416 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.63 54.0 5.35e-01 100.0% 89.3%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 53.0 4.92e-01 95.7% 78.9%
4996509 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.63 55.0 5.38e-01 98.6% 98.7%
4976915 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.63 54.0 4.85e-01 97.1% 75.5%
3226149 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.58e-01 97.1% 63.5%
3589736 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 45.0 4.52e-01 78.6% 81.4%
3264091 11.1.1.1038 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SIBA-E_N, Ig_SIBA-E_2nd 0.62 53.0 3.73e-01 95.7% 35.1%
2855773 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.62 54.0 4.54e-01 100.0% 78.9%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 51.0 4.68e-01 95.7% 74.7%
4943587 1.1.9.54 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.61 54.0 5.10e-01 100.0% 85.9%
4928178 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.61 54.0 4.09e-01 100.0% 42.4%
4990786 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 53.0 4.20e-01 100.0% 48.0%
3940314 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 52.0 4.23e-01 100.0% 66.4%
5051591 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.60 53.0 5.10e-01 100.0% 91.3%
4229140 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 48.0 4.56e-01 95.7% 73.3%
4994417 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.60 53.0 4.40e-01 100.0% 58.4%
4060574 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.60 50.0 4.89e-01 92.9% 86.7%
4375569 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.60 53.0 5.09e-01 100.0% 92.5%
108 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 52.0 4.66e-01 100.0% 74.0%
2582102 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.60 48.0 3.96e-01 97.1% 48.1%
4995280 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 47.0 3.97e-01 88.6% 75.2%
4963284 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.59 52.0 5.12e-01 100.0% 94.6%
5054829 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.59 52.0 5.14e-01 100.0% 97.3%
3666657 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.58 51.0 4.64e-01 100.0% 75.8%
3302541 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.58 49.0 4.29e-01 100.0% 93.9%
4347919 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 47.0 4.36e-01 95.7% 71.1%
5024532 70.3.1.12 beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.57 48.0 4.51e-01 92.9% 90.6%
4069807 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 50.0 4.47e-01 100.0% 73.0%
3693075 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.57 43.0 3.43e-01 82.9% 80.7%
4075142 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.36e-01 81.4% 60.7%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.14e-01 100.0% 72.2%
3315718 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.54 46.0 4.21e-01 100.0% 74.5%
3875076 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 38.0 3.15e-01 100.0% 39.3%
3535755 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.52 38.0 3.14e-01 100.0% 40.7%
2884685 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.51 42.0 3.31e-01 98.6% 44.4%