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OR475265.1__WNM66401.1__SEA_CULVER_131__00123

Bact-Vir

OR475265.1__WNM66401.1__SEA_CULVER_131__00123

Identity

Accession:
OR475265 ↗
Kingdom:
phage

Quality

61.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Smoothievirus› Gordonia_phage_Culver

TaxID: 3035370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-106
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.64 46.0 4.68e-01 76.1% 98.5%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.36e-01 80.6% 82.2%
1i3pA00 2.60.250.10 Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 0.55 38.0 2.58e-01 73.1% 96.0%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 46.0 4.56e-01 100.0% 94.6%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 41.0 3.06e-01 82.1% 100.0%
2uv8A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 44.0 2.65e-01 95.5% 21.8%
2x2sC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.53e-01 98.5% 44.6%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.84e-01 86.6% 89.1%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.05e-01 77.6% 53.0%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.55e-01 98.5% 50.8%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 38.0 3.60e-01 100.0% 66.7%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 4.02e-01 100.0% 81.6%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 40.0 2.92e-01 89.6% 80.2%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 4.25e-01 100.0% 95.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.05e-01 83.6% 54.5%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 38.0 3.54e-01 100.0% 62.4%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 2.60e-01 70.1% 64.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319893 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 44.0 3.87e-01 77.6% 69.0%
4012540 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 41.0 3.95e-01 71.6% 78.7%
5022840 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 40.0 3.69e-01 70.1% 87.1%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.58 39.0 3.93e-01 71.6% 88.6%
4934251 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.57 40.0 2.87e-01 95.5% 23.2%
3694869 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 43.0 3.45e-01 97.0% 42.5%
3631376 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 43.0 3.54e-01 98.5% 44.4%
4216985 331.19.1.2 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.54 39.0 3.70e-01 79.1% 75.3%
3571315 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 45.0 3.08e-01 91.0% 54.5%
3974239 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 3.61e-01 83.6% 69.5%
4542815 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.54 40.0 3.24e-01 82.1% 66.4%
4990115 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.54 37.0 3.37e-01 70.1% 82.2%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.64e-01 92.5% 84.0%
3616923 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 40.0 3.35e-01 82.1% 65.8%
3939219 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 41.0 2.85e-01 89.6% 53.6%
4014180 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 44.0 3.75e-01 100.0% 70.0%
3593387 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.31e-01 89.6% 83.6%
3441510 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 35.0 2.39e-01 73.1% 20.7%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 40.0 3.70e-01 100.0% 65.3%
4215371 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 35.0 3.27e-01 73.1% 78.9%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 40.0 3.65e-01 100.0% 65.3%