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OR475268.1__WNM66734.1__SEA_PASCALRANGO_71__00070

Bact-Vir

OR475268.1__WNM66734.1__SEA_PASCALRANGO_71__00070

Identity

Accession:
OR475268 ↗
Kingdom:
phage

Quality

66.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-94
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.76 65.0 4.16e-01 91.4% 47.0%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.74 42.0 4.20e-01 100.0% 54.9%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 51.0 5.74e-01 97.1% 94.5%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.71 50.0 3.48e-01 74.3% 77.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.70 62.0 5.55e-01 98.6% 79.4%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.69 47.0 4.07e-01 75.7% 45.9%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.68 60.0 5.57e-01 100.0% 85.2%
1g71A02 1.10.8.160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 0.64 50.0 4.39e-01 98.6% 55.6%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.64 54.0 5.09e-01 98.6% 84.4%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 5.32e-01 91.4% 100.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.64 54.0 5.13e-01 98.6% 87.2%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 54.0 5.36e-01 97.1% 91.9%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 54.0 4.25e-01 100.0% 55.6%
2lpeA02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.63 50.0 5.03e-01 100.0% 87.3%
1xg7A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.62 53.0 4.33e-01 100.0% 81.1%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.62 45.0 4.69e-01 94.3% 84.4%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 54.0 4.33e-01 100.0% 62.2%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 51.0 5.18e-01 97.1% 94.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.54e-01 95.7% 74.4%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 42.0 3.77e-01 71.4% 72.2%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 42.0 4.13e-01 72.9% 77.3%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 54.0 4.18e-01 100.0% 56.3%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.60 46.0 4.48e-01 97.1% 75.3%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.60 51.0 4.56e-01 98.6% 83.8%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 50.0 4.84e-01 100.0% 88.9%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 47.0 3.94e-01 91.4% 54.9%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 49.0 3.83e-01 92.9% 80.9%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.58 48.0 4.02e-01 100.0% 83.8%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 45.0 4.46e-01 87.1% 90.7%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.57 49.0 4.38e-01 100.0% 73.1%
3sqnA02 1.10.1790.40 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.56 46.0 4.01e-01 100.0% 56.8%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 38.0 2.79e-01 74.3% 79.2%
3f6tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 39.0 3.13e-01 77.1% 57.4%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 3.56e-01 95.7% 71.1%
2i62A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.62e-01 75.7% 35.4%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.53 46.0 4.10e-01 100.0% 74.5%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 44.0 3.39e-01 95.7% 60.4%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 36.0 3.48e-01 72.9% 71.1%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 46.0 3.62e-01 100.0% 80.1%
4xeaA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 43.0 3.25e-01 100.0% 82.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.50 39.0 3.33e-01 90.0% 73.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 51.0 5.70e-01 71.4% 83.6%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 50.0 5.33e-01 72.9% 80.0%
3823157 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 36.0 4.37e-01 70.0% 73.3%
3328712 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.73 63.0 4.47e-01 100.0% 35.7%
3690447 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.73 55.0 4.76e-01 81.4% 51.8%
4017273 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 50.0 5.48e-01 87.1% 92.7%
3589089 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.72 53.0 4.62e-01 78.6% 74.3%
3267034 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 48.0 5.40e-01 77.1% 100.0%
3652235 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.70 60.0 4.64e-01 100.0% 43.6%
3590988 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.69 57.0 4.57e-01 100.0% 46.7%
3212366 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.69 47.0 5.20e-01 74.3% 98.0%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 49.0 5.43e-01 75.7% 96.4%
3958858 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.69 60.0 4.93e-01 100.0% 92.3%
3744853 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.68 52.0 3.80e-01 82.9% 32.8%
3948842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 5.14e-01 80.0% 94.5%
3270068 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 58.0 5.51e-01 100.0% 82.4%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.66 45.0 5.10e-01 70.0% 100.0%
3928087 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.66 47.0 4.70e-01 74.3% 77.1%
5057299 101.17.1.0 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.66 57.0 5.21e-01 100.0% 82.1%
4093066 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.65 49.0 4.72e-01 81.4% 88.7%
3401721 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.99e-01 80.0% 96.4%
3450729 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.79e-01 80.0% 78.6%
4957643 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 53.0 3.63e-01 91.4% 50.2%
3506989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 44.0 5.06e-01 71.4% 98.0%
3269159 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.65 47.0 5.04e-01 80.0% 98.2%
5012836 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 53.0 3.58e-01 91.4% 49.1%
3786647 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.64 55.0 5.36e-01 100.0% 91.3%
3229051 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 44.0 4.41e-01 74.3% 72.0%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 44.0 4.68e-01 87.1% 85.0%
4522775 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.63 52.0 3.64e-01 92.9% 62.1%
3404059 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.63 50.0 4.33e-01 94.3% 53.9%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 5.26e-01 91.4% 94.3%
3390058 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.63 54.0 3.80e-01 100.0% 35.4%
3784553 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.63 54.0 5.09e-01 100.0% 81.2%
3598088 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 50.0 4.15e-01 100.0% 48.5%
3794203 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.62 49.0 4.62e-01 85.7% 83.5%
5010816 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.62 51.0 4.22e-01 88.6% 70.0%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.61 52.0 4.47e-01 100.0% 68.3%
3313697 136.1.1.1 alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.61 50.0 3.41e-01 92.9% 38.8%
3230778 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 42.0 4.50e-01 85.7% 92.7%
None 0.60 54.0 4.10e-01 100.0% 51.2%
4001277 101.35.1.7 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Oxidored-like 0.60 43.0 4.44e-01 80.0% 84.4%
3783331 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.59 50.0 4.76e-01 100.0% 82.4%
3603735 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 37.0 2.89e-01 100.0% 30.0%
3709633 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.58 45.0 4.15e-01 91.4% 65.0%
3528056 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 47.0 3.85e-01 100.0% 48.6%
3266370 2007.2.3.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 0.56 51.0 3.78e-01 100.0% 48.6%
4198348 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.55 46.0 3.91e-01 100.0% 58.5%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.55 45.0 3.71e-01 92.9% 67.4%
4959879 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.55 43.0 3.18e-01 100.0% 28.9%
3481514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.77e-01 98.6% 62.1%
3588957 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.55 49.0 4.15e-01 100.0% 75.2%
3414575 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 46.0 3.16e-01 100.0% 65.7%
3590136 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.53 44.0 3.92e-01 100.0% 67.3%
149618 2003.1.5.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NNMT_PNMT_TEMT 0.52 37.0 2.58e-01 75.7% 35.4%
3968994 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.52 45.0 3.52e-01 97.1% 96.8%
3975669 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.51 44.0 3.93e-01 100.0% 66.7%
4953311 604.20.1.0 alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 0.51 41.0 3.78e-01 97.1% 90.0%
5003899 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.51 43.0 2.95e-01 100.0% 88.9%