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OR475272.1__WNM67027.1__SEA_SCHOMBER_6__00006
Bact-VirOR475272.1__WNM67027.1__SEA_SCHOMBER_6__00006
Identity
- Accession:
- OR475272 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Taxonomy
TaxID: 3077154
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-64
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.77 | 48.0 | 5.57e-01 | 92.5% | 100.0% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.74 | 44.0 | 3.18e-01 | 100.0% | 23.2% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.73 | 58.0 | 5.33e-01 | 88.7% | 76.1% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.73 | 60.0 | 5.12e-01 | 92.5% | 58.0% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.72 | 53.0 | 3.83e-01 | 79.2% | 36.2% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.71 | 52.0 | 3.29e-01 | 79.2% | 64.7% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 47.0 | 4.67e-01 | 96.2% | 77.2% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 46.0 | 4.35e-01 | 84.9% | 78.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.62 | 43.0 | 4.35e-01 | 77.4% | 96.4% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 43.0 | 3.65e-01 | 86.8% | 44.0% |
| 2ky6A00 | 2.40.290.30 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain | 0.61 | 52.0 | 3.65e-01 | 94.3% | 86.1% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 44.0 | 3.52e-01 | 81.1% | 84.0% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 36.0 | 2.33e-01 | 90.6% | 11.8% |
| 4bfmA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 49.0 | 3.09e-01 | 92.5% | 89.1% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 45.0 | 3.39e-01 | 83.0% | 72.6% |
| 2xzmE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 49.0 | 3.92e-01 | 96.2% | 50.0% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 39.0 | 3.69e-01 | 71.7% | 54.5% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 48.0 | 4.35e-01 | 98.1% | 75.6% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 49.0 | 3.93e-01 | 98.1% | 75.0% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.58 | 40.0 | 2.94e-01 | 71.7% | 52.3% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 44.0 | 3.56e-01 | 90.6% | 41.7% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 48.0 | 3.72e-01 | 98.1% | 41.3% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 46.0 | 3.82e-01 | 94.3% | 86.8% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.57 | 47.0 | 3.94e-01 | 98.1% | 70.6% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 43.0 | 3.43e-01 | 86.8% | 40.4% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.56 | 47.0 | 3.52e-01 | 98.1% | 39.3% |
| 4hasA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 44.0 | 3.71e-01 | 94.3% | 83.7% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 44.0 | 3.22e-01 | 88.7% | 69.3% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.55 | 33.0 | 3.33e-01 | 73.6% | 56.4% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 41.0 | 3.17e-01 | 81.1% | 82.5% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 43.0 | 3.58e-01 | 100.0% | 46.5% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 47.0 | 3.61e-01 | 100.0% | 41.6% |
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.55 | 31.0 | 3.31e-01 | 77.4% | 59.6% |
| 4l0mA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 47.0 | 3.10e-01 | 100.0% | 66.1% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 37.0 | 3.41e-01 | 73.6% | 62.7% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 38.0 | 3.61e-01 | 73.6% | 76.6% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 45.0 | 3.65e-01 | 98.1% | 64.8% |
| 2zwrB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 35.0 | 2.49e-01 | 71.7% | 45.9% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.53 | 44.0 | 3.38e-01 | 100.0% | 41.2% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.35e-01 | 100.0% | 47.0% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 35.0 | 2.45e-01 | 71.7% | 46.7% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 41.0 | 3.80e-01 | 100.0% | 68.6% |
| 2rovA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.40e-01 | 98.1% | 49.6% |
| 2wacA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 2.97e-01 | 83.0% | 88.1% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.51 | 44.0 | 3.38e-01 | 98.1% | 52.4% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 45.0 | 2.67e-01 | 100.0% | 12.8% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 36.0 | 2.84e-01 | 81.1% | 97.8% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 43.0 | 2.63e-01 | 94.3% | 32.2% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 41.0 | 2.64e-01 | 96.2% | 33.7% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 2.85e-01 | 81.1% | 61.4% |
| 1v5pA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 34.0 | 2.90e-01 | 73.6% | 37.9% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 39.0 | 3.37e-01 | 94.3% | 50.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786329 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.84 | 61.0 | 6.03e-01 | 92.5% | 74.5% |
| 3297981 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.83 | 62.0 | 6.13e-01 | 81.1% | 76.4% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.83 | 58.0 | 4.92e-01 | 84.9% | 47.0% |
| 4944647 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.80 | 61.0 | 6.44e-01 | 86.8% | 97.8% |
| 3383781 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.78 | 57.0 | 5.82e-01 | 83.0% | 82.0% |
| 3683264 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 55.0 | 3.79e-01 | 92.5% | 25.4% |
| 3284535 | 295.1.1.13 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3090 | 0.69 | 47.0 | 3.62e-01 | 71.7% | 80.0% |
| 3867421 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 56.0 | 3.67e-01 | 100.0% | 22.0% |
| 3544618 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.65 | 45.0 | 3.93e-01 | 75.5% | 72.9% |
| 3365706 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 43.0 | 2.75e-01 | 71.7% | 22.1% |
| 3902875 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 47.0 | 4.39e-01 | 84.9% | 66.2% |
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.61 | 48.0 | 4.93e-01 | 83.0% | 94.0% |
| 3629491 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 46.0 | 4.55e-01 | 90.6% | 81.8% |
| 3867103 | 3417.1.1.1 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS | 0.59 | 41.0 | 3.28e-01 | 73.6% | 86.7% |
| 4609498 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.58 | 48.0 | 4.32e-01 | 98.1% | 66.3% |
| 4026577 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.58 | 46.0 | 4.56e-01 | 90.6% | 90.9% |
| 3706713 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 43.0 | 2.51e-01 | 81.1% | 16.6% |
| 4234615 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.57 | 47.0 | 4.23e-01 | 100.0% | 66.7% |
| 3461850 | 150.1.1.88 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon | 0.57 | 50.0 | 3.55e-01 | 98.1% | 58.2% |
| 3512851 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 48.0 | 3.68e-01 | 100.0% | 45.9% |
| 5071179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 45.0 | 4.39e-01 | 88.7% | 93.3% |
| 3606814 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.56 | 45.0 | 4.04e-01 | 100.0% | 61.5% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 49.0 | 3.96e-01 | 100.0% | 79.2% |
| 3176053 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 43.0 | 3.36e-01 | 100.0% | 36.2% |
| 3733718 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.55 | 47.0 | 4.09e-01 | 100.0% | 77.6% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 44.0 | 4.19e-01 | 100.0% | 73.8% |
| None | — | 0.55 | 44.0 | 3.22e-01 | 96.2% | 54.7% | |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.54 | 49.0 | 3.02e-01 | 100.0% | 50.0% |
| 3927286 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 44.0 | 3.99e-01 | 92.5% | 96.0% |
| 1204325 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.54 | 47.0 | 2.76e-01 | 100.0% | 11.9% |
| 3273866 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 2.61e-01 | 92.5% | 21.1% |
| 3774381 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 3.50e-01 | 86.8% | 58.6% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.53 | 45.0 | 3.33e-01 | 96.2% | 63.3% |
| 4195041 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.53 | 45.0 | 3.19e-01 | 100.0% | 32.7% |
| 3774525 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 46.0 | 3.21e-01 | 100.0% | 45.6% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.52 | 32.0 | 3.24e-01 | 79.2% | 56.4% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.52 | 47.0 | 3.67e-01 | 100.0% | 59.1% |
| 3443486 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 36.0 | 2.77e-01 | 73.6% | 36.2% |
| 3903260 | 109.4.1.2707 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PH_21 | 0.52 | 42.0 | 2.47e-01 | 88.7% | 45.5% |
| 3485727 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 45.0 | 3.74e-01 | 100.0% | 88.4% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 42.0 | 2.75e-01 | 100.0% | 78.5% |
| 3475813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 32.0 | 3.47e-01 | 71.7% | 77.8% |
| 4029686 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.50 | 43.0 | 3.36e-01 | 96.2% | 65.8% |
| 3334359 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 41.0 | 2.87e-01 | 92.5% | 82.2% |