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OR475272.1__WNM67035.1__SEA_SCHOMBER_14__00014
Bact-VirOR475272.1__WNM67035.1__SEA_SCHOMBER_14__00014
Identity
- Accession:
- OR475272 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
TaxID: 3077154
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24729.3 best | Acb2_Tad1_hairpin | 51.4 | 1.50e-13 | 98.4% | 86.2% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 56.0 | 5.30e-01 | 74.2% | 70.7% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.75 | 53.0 | 4.85e-01 | 74.2% | 91.4% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.74 | 54.0 | 4.28e-01 | 77.4% | 95.1% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.73 | 64.0 | 5.23e-01 | 100.0% | 77.1% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 52.0 | 3.66e-01 | 74.2% | 25.3% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.72 | 64.0 | 5.17e-01 | 100.0% | 67.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 52.0 | 5.57e-01 | 77.4% | 94.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 52.0 | 4.88e-01 | 77.4% | 94.8% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.71 | 62.0 | 5.74e-01 | 100.0% | 92.5% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.71 | 63.0 | 5.31e-01 | 98.4% | 77.5% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.69 | 57.0 | 4.37e-01 | 96.8% | 39.0% |
| 3gn4A00 | 6.10.220.10 | Special › Helix non-globular › Helical scaffold and wing domains of SecA › | 0.67 | 56.0 | 4.51e-01 | 100.0% | 46.5% |
| 4im0A04 | 1.20.1270.420 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 58.0 | 3.98e-01 | 100.0% | 74.4% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 46.0 | 5.13e-01 | 74.2% | 91.8% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 49.0 | 4.48e-01 | 77.4% | 60.5% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.67 | 59.0 | 4.58e-01 | 100.0% | 57.7% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.66 | 58.0 | 4.87e-01 | 98.4% | 94.3% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.66 | 47.0 | 4.41e-01 | 79.0% | 68.3% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 48.0 | 4.53e-01 | 79.0% | 76.3% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.65 | 46.0 | 4.68e-01 | 77.4% | 77.0% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 54.0 | 4.29e-01 | 100.0% | 61.3% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 46.0 | 4.39e-01 | 75.8% | 67.6% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 43.0 | 4.40e-01 | 71.0% | 73.8% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 54.0 | 4.93e-01 | 100.0% | 92.0% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 46.0 | 4.39e-01 | 75.8% | 64.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 4.24e-01 | 77.4% | 66.2% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.62 | 51.0 | 4.05e-01 | 93.5% | 73.7% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.61 | 54.0 | 4.13e-01 | 100.0% | 71.0% |
| 4r78A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.61 | 51.0 | 3.75e-01 | 100.0% | 75.9% |
| 6epyA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.60 | 50.0 | 3.36e-01 | 95.2% | 25.8% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 50.0 | 4.78e-01 | 95.2% | 100.0% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 51.0 | 3.75e-01 | 98.4% | 68.4% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.59 | 44.0 | 2.68e-01 | 80.6% | 30.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4597634 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.80 | 71.0 | 6.57e-01 | 100.0% | 96.2% |
| 5053669 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.78 | 68.0 | 4.01e-01 | 95.2% | 24.7% |
| 3718788 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.77 | 61.0 | 4.86e-01 | 87.1% | 88.8% |
| 3609099 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.74 | 65.0 | 5.77e-01 | 100.0% | 96.7% |
| 3994787 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.73 | 51.0 | 5.08e-01 | 72.6% | 69.2% |
| 5001960 | 632.2.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR | 0.72 | 63.0 | 6.00e-01 | 100.0% | 98.7% |
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.72 | 63.0 | 5.95e-01 | 100.0% | 90.7% |
| 4988178 | 633.29.1.0 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 | 0.72 | 61.0 | 5.38e-01 | 98.4% | 74.7% |
| 5003008 | 632.2.1.35 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4972 | 0.71 | 63.0 | 5.80e-01 | 100.0% | 90.0% |
| 5004597 | 5069.1.1.56 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF27518 | 0.71 | 60.0 | 4.14e-01 | 98.4% | 37.1% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.70 | 52.0 | 4.55e-01 | 77.4% | 93.3% |
| 3870373 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.70 | 59.0 | 5.07e-01 | 100.0% | 67.6% |
| 3862608 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.70 | 58.0 | 4.85e-01 | 93.5% | 71.8% |
| 5052771 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 58.0 | 4.76e-01 | 93.5% | 71.3% |
| 5074692 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.69 | 48.0 | 4.00e-01 | 74.2% | 42.6% |
| 3772121 | 632.7.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever | 0.69 | 59.0 | 5.32e-01 | 100.0% | 84.4% |
| 3430567 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 48.0 | 4.85e-01 | 74.2% | 78.3% |
| 3272056 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.68 | 58.0 | 4.49e-01 | 100.0% | 82.7% |
| 3704169 | 3285.1.1.0 ↗ | alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain | 0.67 | 57.0 | 3.91e-01 | 96.8% | 76.2% |
| 4567993 | 632.21.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › FIVAR | 0.67 | 58.0 | 5.74e-01 | 100.0% | 96.9% |
| 4371507 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.67 | 58.0 | 5.10e-01 | 100.0% | 83.2% |
| 4972788 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.67 | 56.0 | 4.80e-01 | 100.0% | 60.9% |
| 4404045 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.67 | 56.0 | 3.96e-01 | 100.0% | 50.0% |
| 5018373 | 842.1.1.0 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 | 0.66 | 53.0 | 3.73e-01 | 90.3% | 29.6% |
| 4014913 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 57.0 | 4.42e-01 | 98.4% | 71.4% |
| 3662390 | 632.15.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 | 0.66 | 58.0 | 5.05e-01 | 100.0% | 90.5% |
| 5001019 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.65 | 55.0 | 4.14e-01 | 100.0% | 79.4% |
| 3209446 | 632.22.1.131 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2 | 0.65 | 55.0 | 4.42e-01 | 100.0% | 66.7% |
| 3182665 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 57.0 | 5.00e-01 | 100.0% | 88.4% |
| 3573590 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.65 | 55.0 | 4.80e-01 | 100.0% | 81.0% |
| 3937183 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 56.0 | 4.33e-01 | 100.0% | 51.7% |
| 3651012 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.65 | 53.0 | 4.18e-01 | 93.5% | 81.4% |
| 3419367 | 632.15.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 | 0.65 | 55.0 | 5.04e-01 | 100.0% | 87.1% |
| 3367982 | 632.15.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 | 0.65 | 57.0 | 5.15e-01 | 100.0% | 82.4% |
| 4364347 | 632.21.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › FIVAR | 0.65 | 54.0 | 5.52e-01 | 95.2% | 100.0% |
| 4653531 | 632.1.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA | 0.64 | 54.0 | 4.61e-01 | 100.0% | 72.7% |
| 3377582 | 632.21.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › GAUT_1 | 0.64 | 57.0 | 4.94e-01 | 100.0% | 74.7% |
| 2507424 | 6091.1.1.1 ↗ | alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › FIVAR | 0.64 | 53.0 | 4.87e-01 | 96.8% | 89.4% |
| 4991538 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.64 | 53.0 | 3.99e-01 | 100.0% | 61.5% |
| 4622191 | 192.29.1.258 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BREX_BrxC_4th | 0.64 | 51.0 | 3.69e-01 | 88.7% | 71.9% |
| 4367113 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.63 | 52.0 | 4.54e-01 | 100.0% | 74.3% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.62 | 52.0 | 3.28e-01 | 93.5% | 96.2% |
| 3165347 | 148.1.3.335 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AzlD | 0.62 | 53.0 | 5.11e-01 | 100.0% | 85.1% |
| 3321494 | 632.2.1.27 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GAUT_1 | 0.62 | 54.0 | 4.78e-01 | 100.0% | 74.7% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.15e-01 | 96.8% | 24.9% |