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OR475272.1__WNM67128.1__SEA_SCHOMBER_107__00107
Bact-VirOR475272.1__WNM67128.1__SEA_SCHOMBER_107__00107
Identity
- Accession:
- OR475272 ↗
- Kingdom:
- phage
Quality
75.2
mean pLDDT
Taxonomy
TaxID: 3077154
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-41
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8c5yA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 48.0 | 3.15e-01 | 100.0% | 15.9% |
| 2luyA01 | 3.30.60.210 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain | 0.72 | 39.0 | 3.40e-01 | 79.5% | 33.3% |
| 2y8nB01 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 41.0 | 4.06e-01 | 97.4% | 54.8% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.66 | 51.0 | 4.10e-01 | 87.2% | 48.8% |
| 1wemA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 40.0 | 3.26e-01 | 87.2% | 27.6% |
| 1z8gA01 | 3.10.250.10 | Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain | 0.63 | 52.0 | 3.94e-01 | 97.4% | 62.5% |
| 4q5eA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 42.0 | 3.28e-01 | 76.9% | 62.4% |
| 1qviA01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.59 | 42.0 | 3.20e-01 | 84.6% | 36.5% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.59 | 41.0 | 3.00e-01 | 74.4% | 55.7% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 38.0 | 3.53e-01 | 87.2% | 44.2% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 2.78e-01 | 87.2% | 99.1% |
| 5aozA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 43.0 | 3.06e-01 | 89.7% | 48.9% |
| 2riqA02 | 2.20.25.630 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 43.0 | 3.88e-01 | 100.0% | 56.7% |
| 1g8jB00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 50.0 | 3.46e-01 | 100.0% | 39.1% |
| 1tzfA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 37.0 | 2.33e-01 | 71.8% | 10.4% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.56 | 39.0 | 2.40e-01 | 71.8% | 11.8% |
| 5ohzA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 42.0 | 2.45e-01 | 89.7% | 17.5% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 4.00e-01 | 97.4% | 67.3% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 37.0 | 2.33e-01 | 74.4% | 12.1% |
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 37.0 | 2.48e-01 | 89.7% | 16.2% |
| 1fxrA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.60e-01 | 92.3% | 67.2% |
| 1xutA01 | 4.10.1290.10 | Few Secondary Structures › Irregular › Tumor necrosis factor receptor fold › Tumor necrosis factor receptor superfamily | 0.52 | 34.0 | 3.51e-01 | 74.4% | 62.9% |
| 1ii2A03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.52 | 40.0 | 2.55e-01 | 100.0% | 23.4% |
| 1wevA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 38.0 | 3.34e-01 | 92.3% | 51.6% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 39.0 | 3.89e-01 | 94.9% | 83.3% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 35.0 | 2.14e-01 | 87.2% | 98.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043002 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.73 | 49.0 | 4.79e-01 | 100.0% | 62.2% |
| 5059873 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.73 | 49.0 | 3.42e-01 | 100.0% | 20.7% |
| 4982096 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 48.0 | 5.09e-01 | 97.4% | 90.0% |
| 5075345 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.71 | 47.0 | 4.43e-01 | 97.4% | 54.0% |
| 5009395 | 7.1.1.6 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › Tricorn_PDZ | 0.71 | 55.0 | 4.27e-01 | 89.7% | 50.5% |
| 3262703 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 47.0 | 4.44e-01 | 100.0% | 56.0% |
| 4948064 | 375.10.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF | 0.68 | 45.0 | 4.24e-01 | 97.4% | 54.0% |
| 3394531 | 6159.1.1.10 ↗ | extended segments › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain › Nup54 C-terminal interacting domain › zf_UBZ | 0.67 | 41.0 | 3.83e-01 | 87.2% | 48.0% |
| 1323679 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.67 | 45.0 | 4.52e-01 | 100.0% | 68.3% |
| 3757047 | 358.1.1.3 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 | 0.67 | 56.0 | 4.27e-01 | 97.4% | 81.1% |
| 2629776 | 358.1.1.0 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like | 0.66 | 55.0 | 4.20e-01 | 97.4% | 60.6% |
| 3573607 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.66 | 46.0 | 4.76e-01 | 100.0% | 85.7% |
| 3589899 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 44.0 | 4.28e-01 | 97.4% | 60.0% |
| 4529325 | 102.1.1.81 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 | 0.66 | 48.0 | 3.18e-01 | 84.6% | 18.9% |
| 3539884 | 389.1.1.53 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_LMN_ATRN | 0.66 | 49.0 | 4.44e-01 | 94.9% | 58.2% |
| 3638548 | 375.1.1.44 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase | 0.65 | 49.0 | 4.80e-01 | 87.2% | 100.0% |
| 5053416 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.64 | 43.0 | 4.24e-01 | 100.0% | 62.2% |
| 3277058 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.63 | 42.0 | 4.39e-01 | 100.0% | 77.1% |
| 4659414 | 102.1.1.81 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 | 0.63 | 48.0 | 3.22e-01 | 92.3% | 62.8% |
| 3278735 | 102.1.1.54 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD | 0.63 | 45.0 | 3.39e-01 | 84.6% | 28.7% |
| 4251952 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 46.0 | 3.50e-01 | 84.6% | 31.4% |
| 4336808 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.62 | 45.0 | 3.04e-01 | 84.6% | 18.9% |
| 4509914 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.61 | 47.0 | 3.12e-01 | 92.3% | 62.2% |
| 4292069 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.61 | 46.0 | 3.10e-01 | 92.3% | 62.8% |
| 4668260 | 102.1.1.99 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 | 0.60 | 46.0 | 3.09e-01 | 92.3% | 62.2% |
| 4246187 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.60 | 47.0 | 3.05e-01 | 92.3% | 65.6% |
| 3959677 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 48.0 | 4.34e-01 | 97.4% | 63.6% |
| 4128729 | 102.1.1.96 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 | 0.60 | 44.0 | 3.01e-01 | 92.3% | 62.8% |
| 4398503 | 221.4.1.27 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › Zn_ribbon_NUD | 0.60 | 43.0 | 3.17e-01 | 100.0% | 25.8% |
| 3879611 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.60 | 44.0 | 2.97e-01 | 87.2% | 20.0% |
| 4944040 | 375.2.1.0 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like | 0.60 | 42.0 | 4.12e-01 | 97.4% | 64.4% |
| 3514831 | 389.1.1.9 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_2 | 0.60 | 44.0 | 4.44e-01 | 100.0% | 82.5% |
| 4512985 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.59 | 44.0 | 3.03e-01 | 94.9% | 63.3% |
| 3512518 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 39.0 | 3.97e-01 | 87.2% | 64.1% |
| 3247805 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.59 | 41.0 | 3.86e-01 | 100.0% | 60.0% |
| 4098561 | 102.1.1.96 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 | 0.58 | 42.0 | 2.90e-01 | 92.3% | 59.5% |
| 4512339 | 102.1.1.99 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 | 0.58 | 43.0 | 2.93e-01 | 92.3% | 62.2% |
| 4074538 | 102.1.1.79 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 | 0.58 | 42.0 | 2.87e-01 | 92.3% | 60.5% |
| 4051001 | 102.1.1.79 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 | 0.57 | 41.0 | 2.87e-01 | 92.3% | 62.8% |
| 4358944 | 102.1.1.81 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 | 0.57 | 41.0 | 2.86e-01 | 92.3% | 63.3% |
| 3287068 | 375.1.1.281 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_DZR_6 | 0.56 | 48.0 | 4.07e-01 | 97.4% | 60.0% |
| 4066899 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.56 | 41.0 | 2.83e-01 | 92.3% | 62.8% |
| 4265821 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.56 | 46.0 | 2.84e-01 | 100.0% | 15.1% |
| 3995563 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.56 | 44.0 | 4.20e-01 | 100.0% | 74.0% |
| 4223427 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 44.0 | 2.68e-01 | 100.0% | 14.2% |
| 3879908 | 11.1.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida | 0.54 | 47.0 | 3.02e-01 | 100.0% | 40.0% |
| 3940432 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 39.0 | 2.27e-01 | 84.6% | 54.1% |
| 3584285 | 5.1.11.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N | 0.53 | 42.0 | 2.48e-01 | 100.0% | 18.3% |
| 4552859 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.53 | 38.0 | 2.46e-01 | 82.1% | 27.1% |
| 3876570 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.53 | 42.0 | 4.20e-01 | 100.0% | 87.5% |
| 3923899 | 130.1.1.15 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PADR1_N | 0.52 | 38.0 | 2.82e-01 | 100.0% | 25.7% |
| 4114687 | 386.1.1.259 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 | 0.52 | 35.0 | 3.61e-01 | 94.9% | 78.8% |
| 5008358 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.51 | 41.0 | 3.80e-01 | 100.0% | 85.5% |
| 3568281 | 11.1.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida | 0.51 | 44.0 | 3.39e-01 | 100.0% | 90.9% |
| 3485054 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 38.0 | 2.22e-01 | 87.2% | 88.7% |