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OR475272.1__WNM67138.1__SEA_SCHOMBER_117__00117

Bact-Vir

OR475272.1__WNM67138.1__SEA_SCHOMBER_117__00117

Identity

Accession:
OR475272 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bendigovirus› Gordonia_Phage_Schomber

TaxID: 3077154

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-148
PDB
Domain cluster: rep: MK105819.1__AZB50584.1__X__00063__D4-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14464.12 best Prok-JAB 30.5 4.00e-07 88.2% 51.7%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.73 65.0 6.05e-01 93.4% 77.7%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.61 24.0 3.67e-01 86.8% 100.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 20.0 2.62e-01 85.3% 49.3%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 22.0 3.13e-01 75.0% 71.4%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.57 27.0 3.24e-01 84.6% 65.6%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 34.0 3.93e-01 83.8% 85.4%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 36.0 3.48e-01 83.8% 57.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 34.0 4.04e-01 83.8% 92.3%
2e11A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 46.0 3.74e-01 91.2% 87.9%
5swcD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.55 44.0 3.81e-01 84.6% 84.0%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 38.0 4.06e-01 75.0% 83.5%
4lqeA00 3.40.1350.140 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like 0.55 38.0 3.75e-01 72.1% 89.9%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.51 43.0 4.24e-01 92.6% 84.2%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 24.0 3.22e-01 82.4% 83.6%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.51 44.0 4.01e-01 94.1% 72.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 44.0 4.44e-01 97.8% 93.4%
3g98A00 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.50 37.0 4.05e-01 92.6% 93.7%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 37.0 2.85e-01 76.5% 75.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4993841 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.82 66.0 6.66e-01 91.2% 84.3%
4994059 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.80 63.0 6.36e-01 87.5% 82.2%
5068304 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.75 63.0 6.07e-01 92.6% 79.3%
4116968 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.73 60.0 5.77e-01 89.0% 77.3%
4060749 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.67 59.0 4.37e-01 93.4% 48.0%
4681448 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.66 58.0 4.91e-01 93.4% 75.1%
1687168 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.66 57.0 5.07e-01 91.2% 75.0%
4438753 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.64 59.0 4.66e-01 100.0% 81.5%
3017662 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.63 43.0 4.36e-01 83.8% 69.9%
4989279 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 28.0 3.43e-01 82.4% 63.3%
4514947 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.58 48.0 2.82e-01 88.2% 41.3%
3837554 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.57 46.0 3.88e-01 83.8% 85.6%
3501616 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.56 36.0 4.20e-01 83.1% 92.6%
4930745 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.56 44.0 3.70e-01 83.8% 98.7%
5081349 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.56 36.0 4.06e-01 83.8% 84.8%
4046575 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.55 41.0 4.40e-01 94.1% 91.3%
4096833 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.54 37.0 4.02e-01 74.3% 83.5%
4971643 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 3.62e-01 87.5% 91.6%
4971943 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.53 34.0 3.97e-01 83.8% 92.6%
3475225 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.52 36.0 4.10e-01 83.1% 92.4%
3589480 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 36.0 3.57e-01 72.1% 85.5%
11035 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.51 44.0 4.01e-01 94.1% 72.0%
3265859 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 33.0 3.69e-01 92.6% 83.5%
4245081 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.51 44.0 3.98e-01 94.1% 77.8%
4650778 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.50 43.0 3.90e-01 91.2% 79.4%
4266767 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.50 27.0 3.53e-01 87.5% 98.6%