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OR475274.1__WNM67303.1__SEA_WYBORN_60__00060
Bact-VirOR475274.1__WNM67303.1__SEA_WYBORN_60__00060
Identity
- Accession:
- OR475274 ↗
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Berryhillviridae›
Sicariusvirus›
Arthrobacter_phage_Wyborn
TaxID: 3059067
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
D2
medium
residues 57-106
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.86 | 55.0 | 5.31e-01 | 70.0% | 58.9% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.85 | 57.0 | 5.80e-01 | 70.0% | 71.4% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.81 | 55.0 | 4.28e-01 | 70.0% | 39.4% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.80 | 51.0 | 5.29e-01 | 72.0% | 70.2% |
| 3deoA02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.77 | 55.0 | 3.88e-01 | 82.0% | 26.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 49.0 | 4.35e-01 | 70.0% | 47.3% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.71 | 56.0 | 4.88e-01 | 92.0% | 70.7% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 46.0 | 4.44e-01 | 70.0% | 59.3% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 44.0 | 4.23e-01 | 70.0% | 58.3% |
| 7e5wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 44.0 | 3.24e-01 | 70.0% | 35.2% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.65 | 59.0 | 3.92e-01 | 100.0% | 74.7% |
| 4ui9Y03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 52.0 | 4.47e-01 | 90.0% | 73.8% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.62 | 37.0 | 3.98e-01 | 76.0% | 70.7% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 42.0 | 3.67e-01 | 70.0% | 44.3% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 42.0 | 3.84e-01 | 78.0% | 53.0% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 43.0 | 4.33e-01 | 74.0% | 80.0% |
| 5hxgB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.60 | 40.0 | 3.70e-01 | 70.0% | 81.5% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 43.0 | 3.53e-01 | 78.0% | 51.6% |
| 2hyjA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 40.0 | 4.17e-01 | 72.0% | 97.8% |
| 2fd5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 40.0 | 4.09e-01 | 72.0% | 85.4% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.58 | 36.0 | 3.18e-01 | 70.0% | 43.2% |
| 3rnlA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 2.64e-01 | 78.0% | 55.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3432510 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.93 | 64.0 | 5.76e-01 | 72.0% | 55.4% |
| 5058438 | 192.28.1.0 ↗ | alpha bundles › Long alpha-hairpin › IDEAL domain › IDEAL domain | 0.86 | 59.0 | 5.99e-01 | 72.0% | 72.0% |
| 3568681 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.83 | 62.0 | 3.86e-01 | 80.0% | 35.4% |
| 3419256 | 3652.1.1.2 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer | 0.83 | 55.0 | 5.59e-01 | 70.0% | 70.0% |
| 3302903 | 3652.1.1.2 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer | 0.83 | 57.0 | 5.73e-01 | 72.0% | 72.0% |
| 3936162 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.81 | 59.0 | 6.22e-01 | 84.0% | 86.7% |
| 3657872 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 55.0 | 4.20e-01 | 78.0% | 38.3% |
| 3826566 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.74 | 54.0 | 3.94e-01 | 78.0% | 30.4% |
| 3349142 | 192.31.1.2 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 › DUF212 | 0.73 | 48.0 | 5.03e-01 | 70.0% | 77.8% |
| 3978015 | 633.16.2.2 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 | 0.68 | 61.0 | 5.20e-01 | 96.0% | 64.0% |
| 3361779 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.68 | 58.0 | 3.89e-01 | 100.0% | 48.8% |
| 3651542 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.68 | 58.0 | 3.80e-01 | 100.0% | 47.1% |
| 4013155 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.66 | 45.0 | 3.45e-01 | 72.0% | 41.7% |
| 4012972 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.63 | 47.0 | 3.18e-01 | 82.0% | 41.1% |
| 3222238 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.61 | 41.0 | 3.73e-01 | 72.0% | 77.1% |
| 3444757 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.60 | 44.0 | 4.32e-01 | 80.0% | 81.5% |
| 3218795 | 548.1.1.0 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain | 0.60 | 44.0 | 4.57e-01 | 88.0% | 95.6% |
| 3877511 | 213.1.1.15 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Gly_acyl_tr_N | 0.51 | 37.0 | 2.95e-01 | 86.0% | 96.8% |