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OR487170.1__WNN20005.1__X__00045

Bact-Vir

OR487170.1__WNN20005.1__X__00045

Identity

Accession:
OR487170 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-146
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26674.1 best Prophage_tail_N2 27.2 5.90e-06 52.0% 90.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 25.0 3.93e-01 78.1% 89.5%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 26.0 3.41e-01 85.6% 64.1%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.65 30.0 3.79e-01 91.1% 71.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 31.0 3.43e-01 100.0% 59.0%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 19.0 3.37e-01 84.9% 97.3%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 29.0 3.28e-01 86.3% 58.2%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.60 28.0 3.60e-01 91.1% 73.6%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 24.0 2.94e-01 85.6% 57.6%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 26.0 3.01e-01 86.3% 55.8%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.56 26.0 3.46e-01 91.1% 81.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 24.0 3.67e-01 87.7% 100.0%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 28.0 3.40e-01 92.5% 78.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 21.0 3.05e-01 81.5% 83.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 23.0 3.17e-01 87.7% 83.6%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 31.0 3.12e-01 88.4% 60.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.78 33.0 4.44e-01 100.0% 71.8%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 35.0 4.43e-01 100.0% 70.0%
3946849 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 29.0 4.85e-01 84.9% 100.0%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.76 35.0 4.53e-01 100.0% 73.3%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.75 26.0 3.40e-01 75.3% 54.1%
3972306 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.73 45.0 5.54e-01 78.1% 100.0%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 32.0 3.83e-01 87.0% 61.0%
160389 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 32.0 3.48e-01 87.0% 52.0%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.69 33.0 3.99e-01 93.8% 68.4%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 35.0 4.33e-01 92.5% 77.9%
3580019 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 31.0 4.61e-01 93.8% 100.0%
1175750 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 27.0 3.64e-01 81.5% 71.4%
5008430 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 26.0 3.26e-01 87.0% 61.2%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 29.0 3.29e-01 87.0% 57.3%
3730216 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.62 31.0 3.82e-01 95.2% 75.6%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 33.0 3.59e-01 100.0% 60.8%
3729936 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.60 32.0 3.82e-01 93.8% 75.0%
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 32.0 3.73e-01 91.8% 72.4%
4172288 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.59 28.0 3.56e-01 91.1% 74.4%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 30.0 3.41e-01 100.0% 65.1%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 32.0 3.80e-01 92.5% 79.0%
3639927 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.57 31.0 3.51e-01 94.5% 69.1%
3329019 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 22.0 3.48e-01 88.4% 100.0%
4023972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 30.0 3.56e-01 92.5% 72.4%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 23.0 3.49e-01 88.4% 95.0%
4645759 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.55 26.0 2.38e-01 99.3% 31.3%
3262455 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.54 30.0 3.61e-01 92.5% 80.0%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 31.0 3.48e-01 91.8% 73.0%
4682467 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 28.0 3.39e-01 91.8% 77.9%
4519111 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 26.0 3.25e-01 91.8% 77.8%
3634274 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 23.0 2.62e-01 86.3% 51.8%
3595489 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 19.0 2.76e-01 80.8% 73.3%
4618123 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.51 25.0 2.42e-01 100.0% 36.5%
4913414 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.51 28.0 3.25e-01 92.5% 73.6%
4889079 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.51 28.0 3.25e-01 92.5% 73.6%
D2 medium residues 149-166_249-319
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 55.0 5.82e-01 94.4% 97.5%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.65 58.0 5.67e-01 97.8% 97.9%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 40.0 4.02e-01 76.4% 62.6%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.62 52.0 5.01e-01 98.9% 83.0%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 55.0 5.14e-01 100.0% 98.2%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.60 52.0 5.18e-01 96.6% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 3.99e-01 88.8% 72.5%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 41.0 3.77e-01 100.0% 54.9%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 48.0 4.78e-01 96.6% 88.2%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 51.0 4.78e-01 100.0% 84.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.78e-01 78.7% 92.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 38.0 3.56e-01 96.6% 56.0%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.35e-01 93.3% 47.5%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.54 45.0 3.74e-01 95.5% 98.8%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 37.0 3.04e-01 76.4% 81.1%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 43.0 3.39e-01 94.4% 50.8%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.50 36.0 3.05e-01 93.3% 43.1%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 42.0 3.34e-01 96.6% 51.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.91 86.0 8.45e-01 100.0% 96.8%
3590379 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 70.0 7.01e-01 92.1% 94.4%
4033372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 66.0 6.13e-01 92.1% 78.2%
373012 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.68 55.0 5.79e-01 94.4% 96.2%
3635381 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 46.0 3.28e-01 71.9% 70.8%
4342567 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 55.0 5.07e-01 97.8% 71.3%
5023996 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.65 57.0 5.31e-01 97.8% 100.0%
4938797 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.63 57.0 4.73e-01 100.0% 80.0%
5018418 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.63 57.0 4.66e-01 100.0% 76.9%
4554927 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 54.0 5.20e-01 95.5% 100.0%
4967745 1.1.9.56 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30793 0.62 51.0 4.84e-01 100.0% 74.5%
4069101 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 53.0 5.10e-01 94.4% 97.0%
4312484 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.61 51.0 4.88e-01 94.4% 98.1%
5001719 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.61 55.0 5.04e-01 100.0% 78.3%
5004529 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.61 52.0 4.78e-01 100.0% 73.0%
4452931 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 50.0 4.83e-01 94.4% 95.2%
3859218 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 42.0 3.87e-01 77.5% 58.3%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 49.0 4.62e-01 94.4% 86.4%
5025232 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.57 40.0 3.10e-01 100.0% 31.4%
4959692 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 40.0 3.48e-01 82.0% 80.7%
3718002 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.53 38.0 3.07e-01 75.3% 82.1%
4548970 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 39.0 3.56e-01 79.8% 80.0%
3548144 2485.1.1.69 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF4174 0.52 39.0 3.29e-01 100.0% 47.3%
3579037 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 38.0 3.62e-01 98.9% 67.6%
5083856 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.50 39.0 3.60e-01 83.1% 72.2%
D3 medium residues 173-244
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8dfkB01 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.59 28.0 3.16e-01 86.1% 54.4%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.47e-01 98.6% 79.7%
1ufoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.12e-01 98.6% 90.7%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 39.0 3.62e-01 98.6% 62.6%
4lniJ01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.51 38.0 3.38e-01 79.2% 86.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034618 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.88 75.0 7.63e-01 100.0% 92.9%
3588732 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.79 66.0 6.58e-01 100.0% 85.3%
3980575 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.74 59.0 5.99e-01 100.0% 87.1%
2468520 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.67 57.0 5.66e-01 100.0% 88.3%
5022511 2004.1.2.3 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.54 47.0 3.61e-01 98.6% 92.1%
4946409 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.53 45.0 3.77e-01 95.8% 88.8%
3819047 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 41.0 3.40e-01 100.0% 45.0%
4928127 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 41.0 3.10e-01 88.9% 49.5%
5049333 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.51 44.0 3.54e-01 100.0% 75.8%
D4 medium residues 324-375
PDB